C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TSEN15 tRNA splicing endonuclease subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000423085 TSEN15-006 ENSG00000198860 9606 + 1:184051746-184074206 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000423085
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000423085 2.732±0.00 3.640±0.00 3.202±2.23 2.372±0.00 1.881±0.46 0.738±0.00 2.548±0.00 0.693±0.00 0.970±0.36 2.352±0.00 4.674±0.68 2.825±0.40 2.597±0.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001BM CIL_0001BM_0002 CGP 1:184051677-184629020

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000213 IEA tRNA-intron endonuclease activity
GO:0005634 IEA nucleus
GO:0006388 IEA tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006397 IEA mRNA processing
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000162371 Tsen15-002 protein_coding Mus_musculus 0 399
ENSMUST00000015124 Tsen15-001 protein_coding Mus_musculus 0 355
ENSMUST00000096101 Gm5874-201 processed_pseudogene Mus_musculus 0 340
ENSMUST00000159717 Tsen15-004 retained_intron Mus_musculus 0 287
ENSMUST00000161717 Tsen15-003 retained_intron Mus_musculus 0.00000005 64
ENSMUST00000159270 Tsen15-005 retained_intron Mus_musculus 0.0001 53

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