C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: reelin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000424685 RELN-201 ENSG00000189056 9606 - 7:103471784-103989516 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderPlacentaENST00000424685
Transcript ID Bladder Placenta
ENST00000424685 0.043±0.00 0.003±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005C9 CIL_0005C9_0001 CGP 7:103352730-103989516
CIL_00040Z CIL_00040Z_0001 CGP 7:103471784-104208047

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161356 Reln-001 protein_coding Mus_musculus 0 13340
ENSMUST00000062372 Reln-002 protein_coding Mus_musculus 0 12620
ENSMUST00000162427 Reln-008 retained_intron Mus_musculus 0 4289
ENSMUST00000159768 Reln-009 retained_intron Mus_musculus 0 3101
ENSMUST00000161353 Reln-010 retained_intron Mus_musculus 0 2798
ENSMUST00000162637 Reln-004 retained_intron Mus_musculus 0 965
ENSMUST00000162622 Reln-005 retained_intron Mus_musculus 0 719
ENSMUST00000160707 Reln-006 retained_intron Mus_musculus 0 640
ENSMUST00000160791 Reln-013 processed_transcript Mus_musculus 0 608
ENSMUST00000162876 Reln-011 nonsense_mediated_decay Mus_musculus 0 558
ENSMUST00000161782 Reln-007 processed_transcript Mus_musculus 0 342
ENSMUST00000159741 Reln-012 retained_intron Mus_musculus 0 200

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