C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 216
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000425013 RNF216-001 ENSG00000011275 9606 - 7:5620047-5781696 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000425013
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000425013 5.633±0.00 5.001±0.00 0.742±0.00 2.038±0.35 2.029±0.81 3.679±2.50 3.277±2.62 1.844±0.89 2.333±0.00 1.097±0.33 2.770±0.85 5.877±5.05 3.707±1.19 10.944±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000854 CIL_000854_0001 VISTA 7:5332287-5936913
CIL_00027J CIL_00027J_0002 CGP 7:5592823-5781739

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006915 IEA apoptotic process
GO:0008270 IEA zinc ion binding
GO:0016032 IEA viral process
GO:0016874 IEA ligase activity
GO:0032648 IDA regulation of interferon-beta production
GO:0043161 IDA proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0050691 IDA regulation of defense response to virus by host
GO:0070936 IDA protein K48-linked ubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000053498 Rnf216-201 protein_coding Mus_musculus 0 2649
ENSDART00000130058 rnf216-201 protein_coding Danio_rerio 0 270
ENSDART00000138783 rnf216-001 protein_coding Danio_rerio 0 270

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