C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM domain binding 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000425280 LDB1-201 ENSG00000198728 9606 - 10:102107583-102120453 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000425280
Transcript ID Adipose Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000425280 7.105±0.00 4.315±0.00 7.429±0.00 4.488±0.00 4.550±1.23 2.706±0.00 4.443±0.00 3.569±0.00 1.631±0.00 21.501±13.20 8.946±1.88 4.461±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005WD CIL_0005WD_0001 CGP 10:102065390-102120453
CIL_00058F CIL_00058F_0001 CGP 10:102107560-102150331

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0000972 ISS transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0000989 IEA transcription factor binding transcription factor activity
GO:0001102 IPI RNA polymerase II activating transcription factor binding
GO:0001158 IEA enhancer sequence-specific DNA binding
GO:0001702 IEA gastrulation with mouth forming second
GO:0001942 IEA hair follicle development
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003714 TAS transcription corepressor activity
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005667 IDA transcription factor complex
GO:0006351 NAS transcription, DNA-templated
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0007275 NAS multicellular organismal development
GO:0009948 IEA anterior/posterior axis specification
GO:0010669 IEA epithelial structure maintenance
GO:0016055 IEA Wnt signaling pathway
GO:0019899 IPI enzyme binding
GO:0021549 IEA cerebellum development
GO:0021702 IEA cerebellar Purkinje cell differentiation
GO:0022607 IEA cellular component assembly
GO:0030182 ISS neuron differentiation
GO:0030274 ISS LIM domain binding
GO:0032784 ISS regulation of DNA-templated transcription, elongation
GO:0035019 IEA somatic stem cell maintenance
GO:0042803 ISS protein homodimerization activity
GO:0043234 ISS protein complex
GO:0043621 IEA protein self-association
GO:0043973 ISS histone H3-K4 acetylation
GO:0045647 ISS negative regulation of erythrocyte differentiation
GO:0045785 IEA positive regulation of cell adhesion
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0046985 ISS positive regulation of hemoglobin biosynthetic process
GO:0060322 IEA head development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000185355 Ldb1-201 protein_coding Mus_musculus 0 2815
ENSMUST00000152946 Ldb1-002 protein_coding Mus_musculus 0 2776
ENSMUST00000156585 Ldb1-007 protein_coding Mus_musculus 0 2745
ENSMUST00000026252 Ldb1-001 protein_coding Mus_musculus 0 2388
ENSMUST00000056931 Ldb1-003 protein_coding Mus_musculus 0 2318
ENSMUST00000137771 Ldb1-004 protein_coding Mus_musculus 0 1471
ENSMUST00000136203 Ldb1-005 retained_intron Mus_musculus 0 1094
ENSMUST00000126320 Ldb1-006 retained_intron Mus_musculus 0 361
ENSMUST00000134015 Pprc1-005 processed_transcript Mus_musculus 0 274

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