C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | short stature homeobox 2 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000425436  |
SHOX2-201 |
ENSG00000168779 |
9606 | - |
3:158097080-158102887  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0007SK | CIL_0007SK_0001 | VISTA | 3:157571437-158172574 |
| CIL_0008TK | CIL_0008TK_0001 | VISTA | 3:157757953-158360211 |
| CIL_00098J | CIL_00098J_0001 | VISTA | 3:157833085-158434392 |
| CIL_0007KJ | CIL_0007KJ_0001 | UCNEbase | 3:157856332-158528467 |
| CIL_0007SC | CIL_0007SC_0001 | VISTA | 3:157864514-158466174 |
| CIL_0008QV | CIL_0008QV_0001 | VISTA | 3:157885521-158486853 |
| CIL_0008BN | CIL_0008BN_0001 | VISTA | 3:157971822-158572677 |
| CIL_00086V | CIL_00086V_0001 | VISTA | 3:157991733-158593047 |
| CIL_0008BM | CIL_0008BM_0001 | VISTA | 3:158007957-158609595 |
| CIL_0008KO | CIL_0008KO_0001 | VISTA | 3:158067861-158669043 |
| CIL_0004JW | CIL_0004JW_0002 | CGP | 3:158095954-158545730 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0003677 | IEA | DNA binding |
| GO:0005634 | IEA | nucleus |
| GO:0006355 | IEA | regulation of transcription, DNA-templated |
| GO:0043565 | IEA | sequence-specific DNA binding |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000162060
|
Shox2-004 | protein_coding | Mus_musculus | 0 | 1286 |
|
ENSMUST00000162098
|
Shox2-002 | protein_coding | Mus_musculus | 0 | 1286 |
|
ENSMUST00000162439
|
Shox2-003 | protein_coding | Mus_musculus | 0 | 965 |
|
ENSMUST00000029422
|
Shox2-001 | protein_coding | Mus_musculus | 0 | 776 |
