C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: short stature homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029422 Shox2-001 ENSMUSG00000027833 10090 - 3:66972790-66981771 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainENSMUST00000029422
Transcript ID Adrenal Brain
ENSMUST00000029422 0.315±0.05 5.425±0.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SK CIL_0007SK_0002 VISTA 3:66400786-67001918
CIL_0008TK CIL_0008TK_0002 VISTA 3:66634735-67237240
CIL_0007KJ CIL_0007KJ_0002 UCNEbase 3:66683972-67341053
CIL_00098J CIL_00098J_0002 VISTA 3:66709377-67310623
CIL_0007SC CIL_0007SC_0002 VISTA 3:66736007-67337651
CIL_0008QV CIL_0008QV_0002 VISTA 3:66770295-67371594
CIL_0008BN CIL_0008BN_0002 VISTA 3:66846973-67447795
CIL_00086V CIL_00086V_0002 VISTA 3:66870618-67471970
CIL_0008BM CIL_0008BM_0002 VISTA 3:66890932-67492590
CIL_0008KO CIL_0008KO_0002 VISTA 3:66912683-67513884
CIL_0004JW CIL_0004JW_0003 CGP 3:66971727-67358396

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001649 IMP osteoblast differentiation
GO:0002053 IMP positive regulation of mesenchymal cell proliferation
GO:0002062 IMP chondrocyte differentiation
GO:0002063 IMP chondrocyte development
GO:0003170 IMP heart valve development
GO:0003209 IMP cardiac atrium morphogenesis
GO:0005634 IEA nucleus
GO:0030326 IMP embryonic limb morphogenesis
GO:0032330 IMP regulation of chondrocyte differentiation
GO:0035115 IMP embryonic forelimb morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045880 IMP positive regulation of smoothened signaling pathway
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048557 IMP embryonic digestive tract morphogenesis
GO:0048598 IMP embryonic morphogenesis
GO:0048743 IMP positive regulation of skeletal muscle fiber development
GO:0050772 IMP positive regulation of axonogenesis
GO:0060272 IMP embryonic skeletal joint morphogenesis
GO:0060351 IMP cartilage development involved in endochondral bone morphogenesis
GO:0060415 IMP muscle tissue morphogenesis
GO:2000172 IMP regulation of branching morphogenesis of a nerve

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000009564 shox2-001 protein_coding Danio_rerio 0 590
ENSDART00000135460 shox2-002 protein_coding Danio_rerio 0 429
ENSDART00000138941 shox2-003 protein_coding Danio_rerio 0 196
ENST00000389589 SHOX2-001 protein_coding Homo_sapiens 0 1356
ENST00000425436 SHOX2-201 protein_coding Homo_sapiens 0 776
ENST00000441443 SHOX2-002 protein_coding Homo_sapiens 0 1945
ENST00000480820 RSRC1-007 protein_coding Homo_sapiens 0 230
ENST00000483851 SHOX2-003 protein_coding Homo_sapiens 0 1253
ENST00000490689 SHOX2-004 retained_intron Homo_sapiens 0 1173
ENST00000554685 SHOX2-005 protein_coding Homo_sapiens 0 470

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