| Transcript ID | Adrenal | Brain |
|---|---|---|
| ENSMUST00000029422 | 0.315±0.05 | 5.425±0.73 |
C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | short stature homeobox 2 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000029422  |
Shox2-001 |
ENSMUSG00000027833 |
10090 | - |
3:66972790-66981771  |
protein_coding |
Expression Patterns
|
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0007SK | CIL_0007SK_0002 | VISTA | 3:66400786-67001918 |
| CIL_0008TK | CIL_0008TK_0002 | VISTA | 3:66634735-67237240 |
| CIL_0007KJ | CIL_0007KJ_0002 | UCNEbase | 3:66683972-67341053 |
| CIL_00098J | CIL_00098J_0002 | VISTA | 3:66709377-67310623 |
| CIL_0007SC | CIL_0007SC_0002 | VISTA | 3:66736007-67337651 |
| CIL_0008QV | CIL_0008QV_0002 | VISTA | 3:66770295-67371594 |
| CIL_0008BN | CIL_0008BN_0002 | VISTA | 3:66846973-67447795 |
| CIL_00086V | CIL_00086V_0002 | VISTA | 3:66870618-67471970 |
| CIL_0008BM | CIL_0008BM_0002 | VISTA | 3:66890932-67492590 |
| CIL_0008KO | CIL_0008KO_0002 | VISTA | 3:66912683-67513884 |
| CIL_0004JW | CIL_0004JW_0003 | CGP | 3:66971727-67358396 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000122 | IDA | negative regulation of transcription from RNA polymerase II promoter |
| GO:0001649 | IMP | osteoblast differentiation |
| GO:0002053 | IMP | positive regulation of mesenchymal cell proliferation |
| GO:0002062 | IMP | chondrocyte differentiation |
| GO:0002063 | IMP | chondrocyte development |
| GO:0003170 | IMP | heart valve development |
| GO:0003209 | IMP | cardiac atrium morphogenesis |
| GO:0005634 | IEA | nucleus |
| GO:0030326 | IMP | embryonic limb morphogenesis |
| GO:0032330 | IMP | regulation of chondrocyte differentiation |
| GO:0035115 | IMP | embryonic forelimb morphogenesis |
| GO:0043565 | IEA | sequence-specific DNA binding |
| GO:0045880 | IMP | positive regulation of smoothened signaling pathway |
| GO:0045944 | IDA | positive regulation of transcription from RNA polymerase II promoter |
| GO:0048557 | IMP | embryonic digestive tract morphogenesis |
| GO:0048598 | IMP | embryonic morphogenesis |
| GO:0048743 | IMP | positive regulation of skeletal muscle fiber development |
| GO:0050772 | IMP | positive regulation of axonogenesis |
| GO:0060272 | IMP | embryonic skeletal joint morphogenesis |
| GO:0060351 | IMP | cartilage development involved in endochondral bone morphogenesis |
| GO:0060415 | IMP | muscle tissue morphogenesis |
| GO:2000172 | IMP | regulation of branching morphogenesis of a nerve |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSDART00000009564
|
shox2-001 | protein_coding | Danio_rerio | 0 | 590 |
|
ENSDART00000135460
|
shox2-002 | protein_coding | Danio_rerio | 0 | 429 |
|
ENSDART00000138941
|
shox2-003 | protein_coding | Danio_rerio | 0 | 196 |
|
ENST00000389589
|
SHOX2-001 | protein_coding | Homo_sapiens | 0 | 1356 |
|
ENST00000425436
|
SHOX2-201 | protein_coding | Homo_sapiens | 0 | 776 |
|
ENST00000441443
|
SHOX2-002 | protein_coding | Homo_sapiens | 0 | 1945 |
|
ENST00000480820
|
RSRC1-007 | protein_coding | Homo_sapiens | 0 | 230 |
|
ENST00000483851
|
SHOX2-003 | protein_coding | Homo_sapiens | 0 | 1253 |
|
ENST00000490689
|
SHOX2-004 | retained_intron | Homo_sapiens | 0 | 1173 |
|
ENST00000554685
|
SHOX2-005 | protein_coding | Homo_sapiens | 0 | 470 |
