C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008BM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs257 VISTA 9606 3:158007957-158609595
GeneTranscriptPositionBiotype
ENSG00000174891 (RSRC1)
arginine/serine-rich coiled-coil 1 		ENST00000295930 (RSRC1-001) 158110052-158544835 protein_coding
ENST00000312179 (RSRC1-004) 158110106-158544793 protein_coding
ENST00000464171 (RSRC1-002) 158110089-158545730 protein_coding
ENST00000468344 (RSRC1-009) 158110149-158136898 processed_transcript
ENST00000471911 (RSRC1-005) 158110156-158469732 processed_transcript
ENST00000471994 (RSRC1-003) 158110068-158460962 protein_coding
ENST00000475278 (RSRC1-006) 158110107-158544525 protein_coding
ENST00000476899 (RSRC1-010) 158110402-158354908 protein_coding
ENST00000477788 (RSRC1-011) 158122154-158354951 nonsense_mediated_decay
ENST00000480119 (RSRC1-013) 158110129-158544443 nonsense_mediated_decay
ENST00000480820 (RSRC1-007) 158105855-158544522 protein_coding
ENST00000482822 (RSRC1-012) 158203072-158543687 protein_coding
ENST00000494002 (RSRC1-008) 158107789-158203245 protein_coding
ENST00000496268 (RSRC1-014) 158203138-158303575 processed_transcript
ENST00000611884 (RSRC1-201) 158110052-158544834 protein_coding
ENSG00000178053 (MLF1)
myeloid leukemia factor 1 		ENST00000355893 (MLF1-001) 158571163-158606460 protein_coding
ENST00000359117 (MLF1-004) 158571184-158606456 protein_coding
ENST00000392822 (MLF1-201) 158582835-158606459 protein_coding
ENST00000466246 (MLF1-014) 158571261-158600173 protein_coding
ENST00000469452 (MLF1-006) 158571195-158605399 protein_coding
ENST00000471745 (MLF1-002) 158571194-158605392 protein_coding
ENST00000477042 (MLF1-013) 158571194-158600159 protein_coding
ENST00000478894 (MLF1-008) 158571254-158605401 protein_coding
ENST00000482628 (MLF1-007) 158571210-158605218 protein_coding
ENST00000484955 (MLF1-005) 158571173-158605397 protein_coding
ENST00000487838 (MLF1-010) 158571261-158598160 nonsense_mediated_decay
ENST00000491767 (MLF1-015) 158571163-158605192 protein_coding
ENST00000495452 (MLF1-012) 158571194-158600175 nonsense_mediated_decay
ENST00000497004 (MLF1-003) 158571194-158607252 processed_transcript
ENST00000498592 (MLF1-009) 158571191-158602939 protein_coding
ENST00000618075 (MLF1-202) 158571164-158606459 protein_coding
ENST00000619577 (MLF1-203) 158571164-158606459 protein_coding
ENSG00000241723 (RP11-113A11.1)
 ENST00000486836 (RP11-113A11.1-001) 158275809-158276421 processed_pseudogene
ENSG00000242536 (RP11-290K4.2)
 ENST00000488999 (RP11-290K4.2-002) 158016216-158088983 lincRNA
ENST00000498241 (RP11-290K4.2-001) 158016371-158088997 lincRNA
ENSG00000243150 (RP11-538P18.2)
 ENST00000475981 (RP11-538P18.2-001) 158545220-158571066 antisense
ENST00000479233 (RP11-538P18.2-002) 158553858-158570907 antisense
ENSG00000243314 (RP11-538P18.1)
 ENST00000484182 (RP11-538P18.1-001) 158496561-158496934 processed_pseudogene
ENSG00000277143 (RP11-113A11.3)
 ENST00000619891 (RP11-113A11.3-001) 158336430-158336777 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0008BM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs257 VISTA 10090 3:66890932-67492590
GeneTranscriptPositionBiotype
ENSMUSG00000027774 (Gfm1)
G elongation factor, mitochondrial 1 		ENSMUST00000077271 (Gfm1-001) 67430096-67476529 protein_coding
ENSMUST00000160529 (Gfm1-003) 67456479-67474804 retained_intron
ENSMUST00000161009 (Gfm1-002) 67430116-67458805 protein_coding
ENSMUSG00000027833 (Shox2)
short stature homeobox 2 		ENSMUST00000029422 (Shox2-001) 66972790-66981771 protein_coding
ENSMUST00000162060 (Shox2-004) 66972780-66978447 protein_coding
ENSMUST00000162098 (Shox2-002) 66971727-66981318 protein_coding
ENSMUST00000162439 (Shox2-003) 66973259-66981141 protein_coding
ENSMUSG00000034544 (Rsrc1)
arginine/serine-rich coiled-coil 1 		ENSMUST00000046542 (Rsrc1-005) 66985703-67358390 protein_coding
ENSMUST00000065047 (Rsrc1-004) 66985685-67353722 protein_coding
ENSMUST00000065074 (Rsrc1-002) 66985672-67358395 protein_coding
ENSMUST00000160504 (Rsrc1-008) 66985978-66994711 protein_coding
ENSMUST00000161726 (Rsrc1-007) 66985967-67358396 protein_coding
ENSMUST00000162036 (Rsrc1-001) 66981390-67356557 protein_coding
ENSMUST00000162362 (Rsrc1-009) 66985670-66996473 protein_coding
ENSMUST00000162620 (Rsrc1-003) 66985685-67085227 retained_intron
ENSMUST00000162693 (Rsrc1-006) 66985704-67356558 protein_coding
ENSMUST00000182708 (Rsrc1-010) 66990972-66994892 retained_intron
ENSMUSG00000047557 (Lxn)
latexin 		ENSMUST00000058981 (Lxn-001) 67457998-67463926 protein_coding
ENSMUST00000160202 (Lxn-002) 67461061-67463782 retained_intron
ENSMUST00000160827 (Lxn-003) 67458001-67461634 retained_intron
ENSMUSG00000048416 (Mlf1)
myeloid leukemia factor 1 		ENSMUST00000061322 (Mlf1-002) 67374148-67400003 protein_coding
ENSMUST00000077916 (Mlf1-001) 67374097-67399998 protein_coding
ENSMUST00000126628 (Mlf1-004) 67374143-67395299 processed_transcript
ENSMUST00000142538 (Mlf1-003) 67374125-67380469 processed_transcript
ENSMUSG00000049404 (Rarres1)
retinoic acid receptor responder (tazarotene induced) 1 		ENSMUST00000054825 (Rarres1-001) 67478972-67515523 protein_coding
ENSMUST00000178314 (Rarres1-201) 67478886-67515523 protein_coding
ENSMUSG00000065245 (Gm22295)
predicted gene, 22295 		ENSMUST00000083311 (Gm22295-201) 67055958-67056064 snRNA
ENSMUSG00000090408 (Gm17402)
predicted gene, 17402 		ENSMUST00000166353 (Gm17402-201) 67365461-67375163 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008BM_0001ENSG00000174891ENST00000295930ENST00000464171ENST00000471994ENST00000475278ENST00000480119ENST00000480820ENST00000482822ENST00000494002ENST00000611884ENSG00000178053ENST00000355893ENST00000359117ENST00000392822ENST00000466246ENST00000469452ENST00000471745ENST00000477042ENST00000482628ENST00000484955ENST00000491767ENST00000495452ENST00000498592ENST00000619577ENSG00000241723ENST00000486836ENSG00000242536ENST00000488999ENST00000498241ENSG00000243150ENST00000475981ENSG00000243314ENST00000484182ENSG00000277143ENST00000619891CIL_0008BM_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000174891 ENST00000295930 N/A N/A N/A N/A N/A N/A N/A 0.808±0.00 2.411±0.00 N/A N/A N/A 3.265±0.00 N/A
ENST00000312179 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464171 N/A 5.070±0.00 N/A 4.835±2.22 5.021±2.84 N/A 0.881±0.00 N/A 1.256±0.36 1.044±0.00 N/A 1.569±0.31 1.605±0.31 N/A
ENST00000468344 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471911 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471994 N/A N/A 4.190±0.00 10.903±3.44 6.026±0.00 3.563±0.00 N/A 1.501±0.00 10.574±0.00 4.273±0.00 N/A 5.187±2.61 9.164±0.00 8.245±0.00
ENST00000475278 N/A N/A 1.308±0.00 N/A N/A N/A N/A N/A N/A 2.049±0.00 N/A 2.575±0.00 N/A N/A
ENST00000476899 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477788 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480119 N/A N/A N/A N/A 2.119±0.00 N/A N/A N/A N/A N/A N/A N/A 0.708±0.00 3.435±0.00
ENST00000480820 5.354±0.00 N/A 1.341±0.00 N/A N/A 3.392±0.00 0.995±0.00 N/A N/A N/A N/A 4.868±3.96 1.001±0.02 N/A
ENST00000482822 N/A N/A N/A 9.727±0.00 N/A 2.181±0.00 N/A 0.921±0.00 2.996±0.00 2.029±0.00 2.366±0.00 N/A N/A N/A
ENST00000494002 N/A N/A N/A N/A 7.577±0.00 N/A N/A N/A 5.185±0.00 7.378±0.00 1.178±0.00 N/A N/A N/A
ENST00000496268 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611884 N/A N/A N/A N/A N/A N/A N/A 2.272±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000178053 ENST00000355893 N/A 0.244±0.00 0.929±0.00 2.081±0.00 1.236±0.00 0.665±0.00 3.994±0.00 1.008±0.00 1.527±0.00 1.757±0.41 1.111±0.78 1.360±0.30 0.178±0.06 N/A
ENST00000359117 0.567±0.00 N/A N/A 2.409±0.00 0.911±0.13 0.793±0.00 7.324±0.00 0.525±0.00 0.095±0.00 1.002±0.00 N/A 0.690±0.58 0.145±0.00 N/A
ENST00000392822 N/A N/A N/A N/A N/A N/A N/A 0.076±0.00 N/A N/A N/A N/A 0.146±0.00 N/A
ENST00000466246 N/A N/A N/A N/A N/A N/A 10.757±0.00 N/A N/A N/A 9.715±0.00 N/A 0.630±0.00 137.169±0.00
ENST00000469452 N/A 0.649±0.00 N/A N/A N/A N/A N/A 0.108±0.00 N/A N/A N/A N/A N/A N/A
ENST00000471745 N/A N/A N/A N/A 1.119±0.00 N/A 19.747±17.10 N/A N/A N/A 2.583±0.11 N/A N/A N/A
ENST00000477042 N/A N/A N/A N/A N/A N/A 4.667±0.00 N/A N/A 2.758±0.00 4.702±0.00 0.390±0.00 N/A 75.976±0.00
ENST00000478894 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482628 N/A 0.734±0.00 N/A N/A N/A N/A N/A N/A N/A 3.458±0.00 1.416±0.00 N/A N/A N/A
ENST00000484955 0.854±0.00 0.343±0.00 N/A 3.774±0.00 2.759±0.00 5.837±0.00 N/A 2.889±0.00 0.077±0.00 6.426±0.00 N/A 4.224±2.98 0.388±0.25 76.491±33.43
ENST00000487838 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491767 1.797±0.00 N/A N/A 5.643±0.00 1.947±0.00 N/A N/A N/A N/A N/A N/A 0.143±0.00 0.385±0.16 154.076±0.00
ENST00000495452 N/A N/A N/A N/A 1.808±0.00 0.766±0.00 N/A N/A N/A N/A N/A 0.116±0.00 N/A N/A
ENST00000497004 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498592 N/A N/A N/A N/A N/A N/A N/A 2.297±0.00 0.909±0.00 N/A N/A N/A N/A N/A
ENST00000618075 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619577 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.408±0.00 N/A N/A N/A
ENSG00000241723 ENST00000486836 0.027±0.00 0.222±0.00 N/A N/A 0.746±0.00 N/A 0.066±0.00 0.028±0.00 N/A 0.233±0.18 0.073±0.00 0.227±0.00 N/A 0.102±0.00
ENSG00000242536 ENST00000488999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.306±0.00
ENST00000498241 0.033±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.426±0.00
ENSG00000243150 ENST00000475981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.451±0.00 10.088±3.14
ENST00000479233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000243314 ENST00000484182 N/A 0.037±0.00 N/A N/A N/A 0.137±0.00 0.068±0.00 N/A 2.329±0.00 N/A N/A N/A N/A 0.085±0.00
ENSG00000277143 ENST00000619891 N/A 0.197±0.00 N/A N/A N/A N/A N/A N/A 0.238±0.00 N/A N/A N/A N/A 0.125±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027774 ENSMUST00000077271 3.492±0.31 N/A 3.149±0.41 4.807±1.32 3.258±0.94 N/A 11.995±0.46 6.120±0.78 4.201±1.03 3.183±0.22 14.582±1.16 3.549±1.42 5.220±1.81 1.373±0.23
ENSMUST00000160529 N/A N/A N/A N/A 11.557±2.73 N/A 22.214±1.38 11.942±0.66 13.103±2.61 N/A 14.234±0.80 9.925±0.60 9.656±4.75 N/A
ENSMUST00000161009 8.703±0.41 29.806±8.80 N/A 4.502±0.57 9.551±2.58 11.461±1.46 20.791±1.77 15.675±1.48 14.463±3.49 7.884±1.40 13.519±1.07 11.244±1.56 9.888±6.92 4.416±0.28
ENSMUSG00000027833 ENSMUST00000029422 N/A 0.315±0.05 N/A 5.425±0.73 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162060 N/A 0.480±0.15 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.284±0.00 N/A N/A
ENSMUST00000162098 N/A N/A N/A 9.536±5.21 2.303±0.88 N/A 0.432±0.15 N/A N/A N/A N/A 0.471±0.00 N/A N/A
ENSMUST00000162439 N/A 0.934±0.11 N/A N/A 5.473±0.86 N/A 0.619±0.00 N/A N/A N/A N/A 0.300±0.00 N/A N/A
ENSMUSG00000034544 ENSMUST00000046542 N/A 0.712±0.00 N/A 4.364±0.00 2.104±0.00 N/A N/A 0.684±0.00 0.277±0.05 N/A N/A 1.663±0.00 1.935±0.00 N/A
ENSMUST00000065047 0.600±0.00 N/A N/A N/A N/A N/A 0.218±0.00 N/A N/A 0.728±0.00 N/A 0.655±0.26 N/A N/A
ENSMUST00000065074 1.939±0.46 N/A 4.650±0.78 4.832±2.60 0.967±0.00 0.952±0.56 0.761±0.18 1.661±0.56 1.826±1.08 1.497±0.59 3.940±0.56 4.048±3.81 3.708±1.17 3.116±0.34
ENSMUST00000160504 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.267±0.56
ENSMUST00000162036 N/A N/A N/A 38.979±0.00 N/A N/A N/A N/A N/A N/A N/A 43.896±0.00 21.297±18.22 144.251±0.00
ENSMUST00000162362 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162620 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.582±0.00 N/A
ENSMUST00000182708 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.951±0.26 N/A N/A
ENSMUSG00000047557 ENSMUST00000058981 16.453±2.89 44.429±3.54 14.121±1.48 24.476±7.17 22.806±10.07 35.505±9.87 N/A 15.455±1.97 3.971±0.00 55.825±10.88 N/A 25.924±9.78 19.688±9.36 9.940±4.20
ENSMUST00000160202 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160827 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.262±0.00 5.911±0.00 N/A
ENSMUSG00000048416 ENSMUST00000061322 0.059±0.00 N/A N/A N/A 10.147±2.55 0.102±0.00 30.744±7.99 0.553±0.17 N/A 1.255±0.08 174.869±22.28 N/A 0.468±0.32 N/A
ENSMUST00000077916 0.293±0.02 1.613±0.12 0.391±0.05 3.635±1.78 2.083±2.24 0.173±0.00 11.914±3.18 0.322±0.19 0.621±0.16 4.800±0.63 22.745±1.80 9.803±9.26 1.270±0.49 262.577±34.57
ENSMUST00000126628 0.287±0.03 N/A N/A N/A 1.730±1.82 N/A N/A 0.228±0.00 0.119±0.00 1.072±0.00 N/A 3.373±1.79 N/A N/A
ENSMUST00000142538 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000049404 ENSMUST00000054825 1.173±0.47 N/A 0.351±0.12 0.209±0.16 1.796±0.52 1.370±0.14 0.359±0.05 0.855±0.49 6.358±6.05 0.759±0.43 0.326±0.14 0.260±0.17 0.851±0.45 2.123±0.70
ENSMUST00000178314 N/A 2.279±1.05 N/A 0.299±0.00 1.816±0.61 1.093±0.17 N/A 0.700±0.35 4.114±5.22 0.653±0.64 0.189±0.12 0.256±0.11 0.980±0.57 0.825±0.12
ENSMUSG00000065245 ENSMUST00000083311 N/A N/A N/A N/A N/A N/A N/A N/A 1.034±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000090408 ENSMUST00000166353 N/A N/A N/A N/A 1.770±0.59 1.243±0.00 N/A N/A 1.692±0.38 N/A N/A 7.929±3.67 N/A N/A

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