C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleic acid binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000425611 NABP1-001 ENSG00000173559 9606 + 2:191678532-191686948 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000425611
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000425611 2.560±0.00 4.761±0.00 0.581±0.13 2.266±0.00 0.444±0.00 1.941±0.00 1.540±0.00 4.336±0.00 0.655±0.00 5.694±5.09 3.117±0.25 3.155±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00042N CIL_00042N_0002 CGP 2:191678068-191847255

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000724 IMP double-strand break repair via homologous recombination
GO:0003676 IEA nucleic acid binding
GO:0003697 ISS single-stranded DNA binding
GO:0003723 IEA RNA binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006281 IMP DNA repair
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0007093 IMP mitotic cell cycle checkpoint
GO:0010212 IMP response to ionizing radiation
GO:0070876 IDA SOSS complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027279 Nabp1-001 protein_coding Mus_musculus 0 1000
ENSMUST00000190103 Nabp1-002 nonsense_mediated_decay Mus_musculus 0 1000
ENSMUST00000186684 Nabp1-005 protein_coding Mus_musculus 0 870
ENSMUST00000188204 Nabp1-009 protein_coding Mus_musculus 0 828
ENSMUST00000186003 Nabp1-006 nonsense_mediated_decay Mus_musculus 0 756
ENSMUST00000189542 Nabp1-003 nonsense_mediated_decay Mus_musculus 0 752
ENSMUST00000188051 Nabp1-007 protein_coding Mus_musculus 0 675
ENSMUST00000185534 Nabp1-008 protein_coding Mus_musculus 0 658
ENSMUST00000188303 Nabp1-004 retained_intron Mus_musculus 0 217

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