C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine repetitive matrix 1 pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000426911 SRRM1P3-001 ENSG00000237307 9606 - X:136976417-136985705 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryTestisENST00000426911
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Testis
ENST00000426911 0.039±0.00 0.230±0.00 0.064±0.00 0.050±0.03 0.190±0.00 0.043±0.00 0.011±0.00 0.100±0.00 0.065±0.05 0.071±0.07 0.019±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZN CIL_0008ZN_0001 VISTA X:136934647-137535712

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105861 Srrm1-003 protein_coding Mus_musculus 0 2462
ENSMUST00000030613 Srrm1-002 protein_coding Mus_musculus 0 1676
ENSMUST00000136342 Srrm1-015 protein_coding Mus_musculus 0 1676
ENSMUST00000084846 Srrm1-001 protein_coding Mus_musculus 0 1600
ENSMUST00000150619 Srrm1-007 retained_intron Mus_musculus 0 1269
ENSMUST00000131373 Srrm1-008 protein_coding Mus_musculus 0 638
ENSMUST00000162914 Srrm1-014 retained_intron Mus_musculus 0 346
ENSMUST00000134019 Srrm1-005 processed_transcript Mus_musculus 0 316
ENSMUST00000134854 Srrm1-004 retained_intron Mus_musculus 0 316
ENSMUST00000136409 Srrm1-006 nonsense_mediated_decay Mus_musculus 0 300

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