C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribulose-5-phosphate-3-epimerase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000429921 RPE-003 ENSG00000197713 9606 + 2:210002628-210021576 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENST00000429921
Transcript ID Brain
ENST00000429921 2.040±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006P1 CIL_0006P1_0001 CGP 2:209771993-210022259
CIL_0006P6 CIL_0006P6_0001 CGP 2:210002565-210171383

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0004750 IEA:IDA ribulose-phosphate 3-epimerase activity
GO:0005829 TAS cytosol
GO:0005975 IEA:IDA carbohydrate metabolic process
GO:0006098 IEA:IDA pentose-phosphate shunt
GO:0008152 IEA metabolic process
GO:0016857 IEA racemase and epimerase activity, acting on carbohydrates and derivatives
GO:0042802 IPI identical protein binding
GO:0042803 IPI protein homodimerization activity
GO:0044281 TAS small molecule metabolic process
GO:0046872 IEA:IDA metal ion binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000142920 Rpe-003 nonsense_mediated_decay Mus_musculus 0 582
ENSMUST00000113995 Rpe-002 protein_coding Mus_musculus 0 582
ENSMUST00000027157 Rpe-001 protein_coding Mus_musculus 0 582
ENSMUST00000190404 Rpe-005 nonsense_mediated_decay Mus_musculus 0 577
ENSMUST00000129190 Kansl1l-003 protein_coding Mus_musculus 0 219
ENSMUST00000068168 Kansl1l-001 protein_coding Mus_musculus 3.00018e-42 178
ENSMUST00000151016 Rpe-004 nonsense_mediated_decay Mus_musculus 9.99995e-41 172

Loading