C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000430976 PTPN4-002 ENSG00000088179 9606 + 2:119882503-119977461 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderLungOvaryPlacentaTestisENST00000430976
Transcript ID Adrenal Bladder Lung Ovary Placenta Testis
ENST00000430976 0.637±0.00 0.828±0.00 0.317±0.00 1.475±0.00 0.277±0.06 0.943±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093M CIL_00093M_0001 VISTA 2:119187057-119791464

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005856 IEA cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000064091 Ptpn4-001 protein_coding Mus_musculus 0 2985
ENSMUST00000166624 Ptpn4-003 nonsense_mediated_decay Mus_musculus 0 1310
ENSMUST00000163435 Ptpn4-002 protein_coding Mus_musculus 0 1083
ENSDART00000000670 ptpn4a-201 protein_coding Danio_rerio 0 523
ENSDART00000078823 ptpn4a-001 protein_coding Danio_rerio 0 523
ENSMUST00000163179 Ptpn4-010 nonsense_mediated_decay Mus_musculus 0 518
ENSMUST00000168808 Ptpn4-007 retained_intron Mus_musculus 0 414
ENSMUST00000164269 Ptpn4-008 nonsense_mediated_decay Mus_musculus 0 377
ENSMUST00000168429 Ptpn4-009 protein_coding Mus_musculus 0 239

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