C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000431277 SNX5-013 ENSG00000089006 9606 - 20:17948890-17968458 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartMuscleENST00000431277
Transcript ID Heart Muscle
ENST00000431277 8.812±0.00 10.284±1.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YD CIL_0008YD_0001 VISTA 20:17559199-18160694
CIL_0002MX CIL_0002MX_0001 CGP 20:17693672-17968980

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006886 IEA intracellular protein transport
GO:0006907 IEA pinocytosis
GO:0035091 IEA phosphatidylinositol binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028909 Snx5-003 protein_coding Mus_musculus 0 893
ENSMUST00000110030 Snx5-001 protein_coding Mus_musculus 0 893
ENSMUST00000153033 Snx5-004 processed_transcript Mus_musculus 0 381
ENSMUST00000124389 Snx5-008 processed_transcript Mus_musculus 1e-36 158
ENSMUST00000155509 Snx5-002 processed_transcript Mus_musculus 2e-29 134
ENSMUST00000156936 Snx5-005 processed_transcript Mus_musculus 3e-22 110

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