C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: akirin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000432648 AKIRIN1-001 ENSG00000174574 9606 + 1:38991223-39006059 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000432648
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000432648 1.709±0.00 3.753±0.00 15.144±6.59 1.898±0.42 5.614±3.88 2.458±0.00 4.711±2.71 10.437±4.04 6.389±5.31 5.435±0.00 8.693±4.88 10.451±0.25 11.545±5.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PZ CIL_0008PZ_0001 VISTA 1:38426937-39028462
CIL_0008G7 CIL_0008G7_0001 VISTA 1:38483085-39084457
CIL_0007Q3 CIL_0007Q3_0001 VISTA 1:38525828-39126769
CIL_000990 CIL_000990_0001 VISTA 1:38863737-39466035

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0031965 IDA nuclear membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102636 Akirin1-001 protein_coding Mus_musculus 0 1827
ENSMUST00000153472 Akirin1-002 processed_transcript Mus_musculus 0 647
ENSMUST00000173570 Gm6623-001 processed_pseudogene Mus_musculus 0 562
ENSMUST00000174752 Gm6659-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000119676 Akirin1-ps-001 processed_pseudogene Mus_musculus 0 460

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