C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000433951 PSMD4P1-001 ENSG00000223741 9606 - 21:36485983-36487411 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000433951
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000433951 0.234±0.00 0.303±0.00 0.143±0.00 0.167±0.00 0.109±0.07 0.210±0.00 0.201±0.00 0.087±0.00 0.200±0.00 0.392±0.00 1.099±0.45 0.134±0.10 0.049±0.00 0.235±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006Z6 CIL_0006Z6_0001 CGP 21:36385378-36576569
CIL_0006Z7 CIL_0006Z7_0001 CGP 21:36460621-36749917

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107237 Psmd4-002 protein_coding Mus_musculus 0 1044
ENSMUST00000071664 Psmd4-001 protein_coding Mus_musculus 0 1007
ENSMUST00000117355 Psmd4-004 protein_coding Mus_musculus 0 811
ENSMUST00000136868 Psmd4-005 retained_intron Mus_musculus 0 784
ENSMUST00000140280 Psmd4-003 retained_intron Mus_musculus 0 435

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