C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysosomal-associated membrane protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000434600 LAMP2-004 ENSG00000005893 9606 - X:120427827-120469365 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyMuscleENST00000434600
Transcript ID Bladder Brain Breast Colon Heart Kidney Muscle
ENST00000434600 5.505±0.00 10.851±0.00 3.639±0.00 3.944±0.00 1.915±0.00 4.582±0.00 2.274±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00016Y CIL_00016Y_0002 CGP X:120362085-120469365
CIL_00016X CIL_00016X_0002 CGP X:120427827-120575794

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002576 TAS platelet degranulation
GO:0005764 IDA lysosome
GO:0005765 IDA lysosomal membrane
GO:0005770 IDA late endosome
GO:0005886 TAS plasma membrane
GO:0007596 TAS blood coagulation
GO:0016020 IDA:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0019899 IPI enzyme binding
GO:0019904 IEA protein domain specific binding
GO:0030168 TAS platelet activation
GO:0030670 IEA phagocytic vesicle membrane
GO:0031088 IDA platelet dense granule membrane
GO:0031902 IDA late endosome membrane
GO:0050821 ISS protein stabilization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000074913 Lamp2-003 protein_coding Mus_musculus 0 785
ENSMUST00000016678 Lamp2-001 protein_coding Mus_musculus 0 568
ENSMUST00000061755 Lamp2-002 protein_coding Mus_musculus 0 564
ENSMUST00000136817 Lamp2-004 retained_intron Mus_musculus 0 327

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