C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: peptidylprolyl isomerase A (cyclophilin A) pseudogene 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000434706 PPIAP13-001 ENSG00000237882 9606 - 10:75089248-75089725 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastKidneyLungMuscleENST00000434706
Transcript ID Adrenal Brain Breast Kidney Lung Muscle
ENST00000434706 0.220±0.00 0.092±0.03 0.064±0.00 0.063±0.00 0.058±0.00 0.702±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JX CIL_0007JX_0001 UCNEbase 10:74418410-76978156
CIL_0008UO CIL_0008UO_0001 VISTA 10:74941035-75542526
CIL_000925 CIL_000925_0001 VISTA 10:74961440-75563087
CIL_0006DL CIL_0006DL_0002 CGP 10:75037836-75109221
CIL_00084B CIL_00084B_0001 VISTA 10:75078488-75679926

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000175860 Gm6061-001 processed_pseudogene Mus_musculus 0 625
ENSMUST00000120318 Gm13493-001 processed_pseudogene Mus_musculus 0 619
ENSMUST00000132846 Ppia-001 protein_coding Mus_musculus 0 619
ENSMUST00000075723 Gm10123-001 processed_pseudogene Mus_musculus 0 617
ENSMUST00000090749 Ppia-005 processed_transcript Mus_musculus 0 595
ENSMUST00000077747 Gm9234-201 processed_pseudogene Mus_musculus 0 586
ENSMUST00000099961 Gm6043-201 processed_pseudogene Mus_musculus 0 579
ENSMUST00000155824 Ppia-003 retained_intron Mus_musculus 0 579
ENSMUST00000075293 E030024N20Rik-001 processed_pseudogene Mus_musculus 0 573
ENSMUST00000119740 Gm12728-001 translated_processed_pseudogene Mus_musculus 0 573
ENSMUST00000119389 Gm14046-001 processed_pseudogene Mus_musculus 0 571
ENSMUST00000178933 Gm5558-201 processed_pseudogene Mus_musculus 0 560
ENSMUST00000081336 Gm6065-201 processed_pseudogene Mus_musculus 0 540
ENSMUST00000137829 Ppia-002 retained_intron Mus_musculus 0 529
ENSMUST00000177265 Gm5777-001 processed_pseudogene Mus_musculus 0 527
ENSMUST00000117621 Gm13750-001 processed_pseudogene Mus_musculus 0 525
ENSMUST00000120735 Gm5883-001 processed_pseudogene Mus_musculus 0 508
ENSMUST00000119751 Gm11469-001 processed_pseudogene Mus_musculus 0 497
ENSMUST00000118678 Gm13679-001 processed_pseudogene Mus_musculus 0 481
ENSMUST00000172723 Gm5967-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000186816 RP23-215C21.3-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000121223 Gm12632-001 processed_pseudogene Mus_musculus 0 381
ENSMUST00000117298 Gm12842-001 processed_pseudogene Mus_musculus 0 374
ENSMUST00000121648 Gm6067-001 processed_pseudogene Mus_musculus 0 294
ENSMUST00000069552 Gm5160-201 protein_coding Mus_musculus 0 292
ENSMUST00000137540 Gclm-003 processed_transcript Mus_musculus 0 289
ENSMUST00000118166 Gm13454-001 processed_pseudogene Mus_musculus 0 276
ENSMUST00000135789 Ppia-004 retained_intron Mus_musculus 0 222
ENSMUST00000185012 Gm12728-003 protein_coding Mus_musculus 0 222
ENSMUST00000184254 Gm12728-002 protein_coding Mus_musculus 0 222
ENSMUST00000188400 RP23-325F17.1-001 processed_pseudogene Mus_musculus 1e-33 147

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