C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 4 gamma, 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000435046 EIF4G1-041 ENSG00000114867 9606 + 3:184320664-184335347 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000435046
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000435046 17.358±0.00 28.526±0.00 14.900±0.00 21.761±0.00 9.613±0.00 20.620±0.00 12.236±0.00 16.140±0.00 14.980±0.00 69.568±0.00 42.865±23.68 26.866±7.78 22.069±3.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005G3 CIL_0005G3_0001 CGP 3:184135038-184684758
CIL_000572 CIL_000572_0001 CGP 3:184298709-184335358
CIL_00056Z CIL_00056Z_0001 CGP 3:184314495-184346275

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 TAS nuclear-transcribed mRNA poly(A) tail shortening
GO:0003723 IEA RNA binding
GO:0003743 TAS translation initiation factor activity
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005829 TAS cytosol
GO:0006412 TAS translation
GO:0006413 TAS translational initiation
GO:0006446 IMP regulation of translational initiation
GO:0008135 TAS translation factor activity, nucleic acid binding
GO:0008219 IEA cell death
GO:0008286 TAS insulin receptor signaling pathway
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 IEA viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000073840 Eif4g1-201 protein_coding Mus_musculus 0 5347
ENSMUST00000115460 Eif4g1-011 protein_coding Mus_musculus 0 5347
ENSMUST00000115457 Eif4g1-003 protein_coding Mus_musculus 0 5347
ENSMUST00000044783 Eif4g1-001 protein_coding Mus_musculus 0 5347
ENSMUST00000132320 Eif4g1-006 retained_intron Mus_musculus 0 5334
ENSMUST00000115461 Eif4g1-004 protein_coding Mus_musculus 0 5334
ENSMUST00000143939 Eif4g1-007 processed_transcript Mus_musculus 0 5254
ENSMUST00000115463 Eif4g1-002 protein_coding Mus_musculus 0 5240
ENSMUST00000150333 Eif4g1-008 processed_transcript Mus_musculus 0 2684
ENSMUST00000128594 Eif4g1-009 processed_transcript Mus_musculus 0 2684
ENSMUST00000142344 Eif4g1-010 protein_coding Mus_musculus 0 2665
ENSMUST00000156226 Eif4g1-005 nonsense_mediated_decay Mus_musculus 0 1777
ENSMUST00000136106 Eif4g1-015 processed_transcript Mus_musculus 0 601
ENSMUST00000154594 Eif4g1-021 processed_transcript Mus_musculus 0 403
ENSMUST00000129958 Eif4g1-017 retained_intron Mus_musculus 0 276
ENSMUST00000140576 Eif4g1-019 protein_coding Mus_musculus 0 254
ENSMUST00000137690 Eif4g1-016 retained_intron Mus_musculus 0 209
ENSMUST00000128840 Eif4g1-020 processed_transcript Mus_musculus 3e-34 152
ENSMUST00000151679 Eif4g1-014 protein_coding Mus_musculus 4e-18 99
ENSMUST00000136713 Eif4g1-018 processed_transcript Mus_musculus 0.0000000000001 84
ENSMUST00000141034 Eif4g1-013 protein_coding Mus_musculus 0.00000000002 77

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