C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cholinergic receptor, nicotinic, alpha 1 (muscle)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000435083 CHRNA1-006 ENSG00000138435 9606 - 2:174747810-174764412 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeHeartOvaryPlacentaENST00000435083
Transcript ID Adipose Heart Ovary Placenta
ENST00000435083 0.253±0.00 0.153±0.00 0.047±0.00 0.086±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001H9 CIL_0001H9_0001 CGP 2:174559572-174764472
CIL_0001HC CIL_0001HC_0001 CGP 2:174747592-175005369

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0006810 IEA transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0034220 IEA ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028515 Chrna1-001 protein_coding Mus_musculus 0 1330

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