C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001HC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000138435-ENSG00000128656 CGP 9606 2:174747592-175005369
GeneTranscriptPositionBiotype
ENSG00000128656 (CHN1)
chimerin 1 		ENST00000295497 (CHN1-002) 174799492-174847549 protein_coding
ENST00000409089 (CHN1-012) 174801707-174847381 protein_coding
ENST00000409156 (CHN1-003) 174799989-175005369 protein_coding
ENST00000409597 (CHN1-014) 174799515-174846405 protein_coding
ENST00000409900 (CHN1-001) 174799363-175005226 protein_coding
ENST00000413882 (CHN1-013) 174808905-174846415 protein_coding
ENST00000425395 (CHN1-008) 174811533-175005345 nonsense_mediated_decay
ENST00000443238 (CHN1-010) 174808927-174847751 protein_coding
ENST00000444394 (CHN1-011) 174801721-174847565 protein_coding
ENST00000444573 (CHN1-015) 174812377-174847198 protein_coding
ENST00000451799 (CHN1-005) 174915067-175005263 nonsense_mediated_decay
ENST00000469597 (CHN1-006) 174877910-175005219 processed_transcript
ENST00000481174 (CHN1-018) 174837113-174877941 processed_transcript
ENST00000485882 (CHN1-016) 174812098-174846965 retained_intron
ENST00000488080 (CHN1-004) 174799495-175005364 processed_transcript
ENST00000490654 (CHN1-007) 174846914-174915292 retained_intron
ENST00000491801 (CHN1-017) 174810900-174812353 retained_intron
ENST00000492964 (CHN1-009) 174799897-174802057 retained_intron
ENSG00000138435 (CHRNA1)
cholinergic receptor, nicotinic, alpha 1 (muscle) 		ENST00000261007 (CHRNA1-002) 174747660-174764461 protein_coding
ENST00000348749 (CHRNA1-001) 174747592-174764472 protein_coding
ENST00000409219 (CHRNA1-005) 174747810-174764412 protein_coding
ENST00000409323 (CHRNA1-004) 174752755-174764453 protein_coding
ENST00000409542 (CHRNA1-003) 174747810-174764412 protein_coding
ENST00000435083 (CHRNA1-006) 174747810-174764412 nonsense_mediated_decay
ENSG00000236449 (AC018890.6)
 ENST00000412835 (AC018890.6-001) 174547374-174665689 antisense
ENST00000442996 (AC018890.6-002) 174547141-174774827 antisense
ENSG00000237104 (AC018890.4)
 ENST00000416004 (AC018890.4-001) 174783046-174787928 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0001HC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027107-ENSMUSG00000056486 CGP 10090 2:73563215-73775346
GeneTranscriptPositionBiotype
ENSMUSG00000027107 (Chrna1)
cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle) 		ENSMUST00000028515 (Chrna1-001) 73563215-73580338 protein_coding
ENSMUSG00000056486 (Chn1)
chimerin 1 		ENSMUST00000070579 (Chn1-003) 73612888-73625740 protein_coding
ENSMUST00000102677 (Chn1-002) 73610745-73660406 protein_coding
ENSMUST00000112024 (Chn1-001) 73610660-73775346 protein_coding
ENSMUST00000124450 (Chn1-006) 73613084-73716409 nonsense_mediated_decay
ENSMUST00000135904 (Chn1-005) 73679622-73768853 protein_coding
ENSMUST00000136953 (Chn1-008) 73624160-73655058 protein_coding
ENSMUST00000139252 (Chn1-004) 73624878-73775326 nonsense_mediated_decay
ENSMUST00000154258 (Chn1-007) 73624118-73660376 protein_coding
ENSMUST00000166199 (Chn1-201) 73610660-73775346 protein_coding
ENSMUST00000180045 (Chn1-202) 73610660-73775346 protein_coding
ENSMUSG00000085838 (Chn1os1)
chimerin 1, opposite strand 1 		ENSMUST00000123613 (Chn1os1-001) 73658270-73660263 antisense
ENSMUSG00000086382 (Chrna1os)
cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle), opposite strand 		ENSMUST00000125413 (Chrna1os-002) 73584850-73589187 antisense
ENSMUST00000147235 (Chrna1os-001) 73584860-73589208 antisense
ENSMUSG00000086544 (Chn1os3)
chimerin 1, opposite strand 3 		ENSMUST00000147420 (Chn1os3-001) 73596526-73616012 antisense
ENSMUST00000149231 (Chn1os3-002) 73596824-73599200 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001HC_0001ENSG00000128656ENST00000295497ENST00000409089ENST00000409156ENST00000409597ENST00000409900ENST00000413882ENST00000425395ENST00000443238ENST00000444394ENST00000444573ENST00000451799ENST00000469597ENST00000481174ENST00000485882ENST00000488080ENST00000490654ENST00000491801ENST00000492964ENSG00000138435ENST00000261007ENST00000348749ENST00000409219ENST00000409323ENST00000409542ENST00000435083ENSG00000236449ENST00000412835ENST00000442996ENSG00000237104ENST00000416004CIL_0001HC_0002ENSMUSG00000027107ENSMUST00000028515ENSMUSG00000056486ENSMUST00000070579ENSMUST00000102677ENSMUST00000112024ENSMUST00000124450ENSMUST00000135904ENSMUST00000136953ENSMUST00000139252ENSMUST00000154258ENSMUST00000166199ENSMUST00000180045ENSMUSG00000085838ENSMUST00000123613ENSMUSG00000086382ENSMUST00000125413ENSMUST00000147235ENSMUSG00000086544ENSMUST00000147420ENSMUST00000149231
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001HC_0001ENSG00000128656ENST00000295497ENST00000409156ENST00000409597ENST00000409900ENST00000444573ENST00000481174ENST00000488080ENST00000490654ENSG00000138435ENST00000261007ENST00000348749ENST00000409219ENST00000409323ENST00000409542ENST00000435083ENSG00000236449ENST00000412835ENST00000442996ENSG00000237104ENST00000416004CIL_0001HC_0002ENSMUSG00000027107ENSMUST00000028515ENSMUSG00000056486ENSMUST00000070579ENSMUST00000102677ENSMUST00000124450ENSMUST00000135904ENSMUST00000139252ENSMUST00000154258ENSMUST00000180045ENSMUSG00000085838ENSMUST00000123613ENSMUSG00000086382ENSMUST00000125413ENSMUST00000147235ENSMUSG00000086544ENSMUST00000147420ENSMUST00000149231
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000128656 ENST00000295497 N/A 3.609±0.00 N/A 138.279±34.36 0.540±0.00 N/A 0.369±0.00 N/A 0.678±0.00 4.626±1.54 0.018±0.00 1.156±0.33 5.180±2.01 N/A
ENST00000409089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409156 N/A N/A N/A N/A N/A 1.767±0.00 0.775±0.17 0.787±0.00 N/A N/A N/A N/A N/A N/A
ENST00000409597 1.694±0.00 7.088±0.00 N/A 141.957±0.00 0.823±0.00 0.950±0.00 1.185±0.00 0.452±0.00 0.114±0.00 4.605±0.00 0.414±0.00 1.728±0.00 4.440±0.00 10.577±0.00
ENST00000409900 N/A 3.894±0.00 N/A N/A 0.921±0.20 1.289±0.00 1.413±0.00 0.210±0.00 0.775±0.00 1.265±0.00 N/A 0.799±0.35 1.874±0.57 6.201±0.00
ENST00000413882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000425395 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443238 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444394 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444573 N/A N/A N/A N/A N/A N/A N/A N/A 1.690±0.00 N/A N/A N/A N/A N/A
ENST00000451799 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469597 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481174 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.062±0.00 N/A N/A
ENST00000485882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488080 N/A N/A N/A N/A N/A 1.523±0.00 N/A 1.035±0.00 0.474±0.00 N/A N/A 0.630±0.00 N/A N/A
ENST00000490654 N/A N/A 2.547±0.00 N/A 4.343±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491801 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000138435 ENST00000261007 N/A N/A N/A 0.131±0.00 N/A N/A N/A N/A N/A N/A 4.600±3.85 N/A N/A N/A
ENST00000348749 0.209±0.00 N/A N/A 0.485±0.00 0.542±0.18 0.253±0.00 0.220±0.00 N/A N/A 0.501±0.00 22.302±19.83 0.168±0.03 0.221±0.05 1.659±0.00
ENST00000409219 N/A 0.001±0.00 N/A 0.123±0.06 N/A N/A 0.021±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000409323 N/A N/A N/A 0.028±0.00 N/A N/A N/A N/A N/A N/A N/A 0.034±0.00 0.035±0.00 N/A
ENST00000409542 N/A 0.010±0.00 N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A 21.542±0.00 0.177±0.00 0.106±0.00 0.596±0.51
ENST00000435083 0.253±0.00 N/A N/A N/A N/A N/A 0.153±0.00 N/A N/A N/A N/A 0.047±0.00 0.086±0.02 N/A
ENSG00000236449 ENST00000412835 0.029±0.00 N/A 0.898±0.00 0.156±0.00 0.080±0.00 N/A 0.302±0.28 0.201±0.00 0.075±0.00 N/A 0.036±0.00 0.072±0.03 0.184±0.00 0.055±0.00
ENST00000442996 N/A N/A N/A 0.148±0.00 N/A N/A N/A N/A N/A 0.019±0.00 N/A N/A 0.400±0.11 0.021±0.02
ENSG00000237104 ENST00000416004 N/A 0.057±0.00 N/A 0.032±0.00 0.006±0.00 N/A N/A N/A N/A 0.038±0.00 N/A N/A N/A 0.051±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027107 ENSMUST00000028515 0.044±0.04 0.035±0.00 0.027±0.00 0.094±0.04 0.465±0.42 0.068±0.02 0.033±0.01 0.021±0.01 0.052±0.06 0.148±0.10 2.488±0.27 0.079±0.05 0.169±0.18 N/A
ENSMUSG00000056486 ENSMUST00000070579 N/A N/A N/A 491.036±0.00 N/A N/A N/A N/A 0.351±0.12 N/A 0.671±0.07 4.218±1.77 5.457±0.01 38.353±9.06
ENSMUST00000102677 N/A N/A N/A 38.625±0.00 N/A 3.016±1.21 N/A N/A 0.028±0.00 N/A 0.080±0.00 0.993±0.00 N/A N/A
ENSMUST00000112024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124450 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.753±0.00 N/A N/A
ENSMUST00000135904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.588±0.00 N/A N/A N/A
ENSMUST00000136953 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139252 N/A N/A N/A N/A N/A 1.243±0.28 N/A N/A N/A N/A N/A 1.103±0.42 3.106±0.00 N/A
ENSMUST00000154258 N/A N/A N/A 172.127±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166199 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000180045 1.303±0.00 N/A 1.819±0.00 32.377±4.79 N/A N/A 1.849±0.60 N/A 0.098±0.05 N/A 0.215±0.08 0.828±0.27 0.310±0.05 6.791±5.07
ENSMUSG00000085838 ENSMUST00000123613 N/A N/A N/A 315.342±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000086382 ENSMUST00000125413 0.560±0.22 0.431±0.11 N/A 0.053±0.01 0.796±0.64 0.332±0.00 0.165±0.08 0.575±0.13 0.354±0.25 0.542±0.11 0.151±0.01 0.615±0.28 0.117±0.03 N/A
ENSMUST00000147235 2.383±0.43 1.172±0.66 2.640±0.32 0.213±0.11 1.700±0.86 0.875±0.36 0.335±0.13 2.251±0.53 1.124±0.92 0.699±0.09 0.124±0.05 2.029±1.40 0.385±0.29 0.149±0.06
ENSMUSG00000086544 ENSMUST00000147420 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.195±0.77 N/A
ENSMUST00000149231 N/A N/A N/A N/A N/A N/A N/A N/A 0.847±0.23 N/A N/A 5.814±2.94 6.101±0.00 N/A

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