C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM and SH3 protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000435347 LASP1-202 ENSG00000002834 9606 + 17:38870143-38921761 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000435347
Transcript ID Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000435347 1.093±0.00 2.006±0.00 2.152±0.00 0.503±0.00 3.795±0.00 1.888±0.00 4.100±0.00 0.230±0.00 16.823±8.32 15.880±4.29 2.083±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006QO CIL_0006QO_0001 CGP 17:38847865-38921770

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005070 TAS SH3/SH2 adaptor activity
GO:0005515 IPI:IEA protein binding
GO:0005925 IDA focal adhesion
GO:0006811 ISS ion transport
GO:0008270 IEA zinc ion binding
GO:0009967 TAS positive regulation of signal transduction
GO:0015075 ISS ion transmembrane transporter activity
GO:0030864 ISS cortical actin cytoskeleton
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043843 Lasp1-001 protein_coding Mus_musculus 0 1223
ENSMUST00000118257 Gm4875-001 processed_pseudogene Mus_musculus 0 965
ENSMUST00000148280 Lasp1-011 protein_coding Mus_musculus 0 745
ENSMUST00000129828 Lasp1-010 protein_coding Mus_musculus 0 532
ENSMUST00000152962 Lasp1-006 protein_coding Mus_musculus 0 479
ENSMUST00000129558 Lasp1-005 protein_coding Mus_musculus 0 479
ENSMUST00000127575 Lasp1-014 retained_intron Mus_musculus 0 459
ENSMUST00000146572 Lasp1-007 protein_coding Mus_musculus 0 440
ENSDART00000051807 lasp1-001 protein_coding Danio_rerio 0 303
ENSMUST00000155762 Lasp1-013 protein_coding Mus_musculus 0 283
ENSMUST00000107569 Lasp1-017 retained_intron Mus_musculus 0 281
ENSDART00000064838 lasp1-002 protein_coding Danio_rerio 0 268
ENSMUST00000107568 Lasp1-015 retained_intron Mus_musculus 0 267
ENSDART00000140376 lasp1-003 processed_transcript Danio_rerio 0 206
ENSMUST00000143571 Lasp1-004 protein_coding Mus_musculus 2e-40 172

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