C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein polypeptide E pseudogene 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000435815 SNRPEP4-001 ENSG00000233270 9606 - 19:5576660-5576938 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalMuscleOvaryPlacentaTestisENST00000435815
Transcript ID Adipose Adrenal Muscle Ovary Placenta Testis
ENST00000435815 0.047±0.00 0.336±0.00 0.476±0.00 0.784±0.00 0.275±0.00 0.170±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003JF CIL_0003JF_0001 CGP 19:5455431-5624046

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166915 Snrpe-001 protein_coding Mus_musculus 0 411
ENSMUST00000121967 Gm14284-001 processed_pseudogene Mus_musculus 0 394
ENSMUST00000172079 Snrpe-005 nonsense_mediated_decay Mus_musculus 0 335
ENSMUST00000164096 Snrpe-002 protein_coding Mus_musculus 0 327
ENSMUST00000118757 Gm15553-001 processed_pseudogene Mus_musculus 0 213
ENSMUST00000171264 Snrpe-007 protein_coding Mus_musculus 1e-16 90

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