C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003JF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000105428-ENSG00000130254 CGP 9606 19:5455431-5624046
GeneTranscriptPositionBiotype
ENSG00000105428 (ZNRF4)
zinc and ring finger 4 		ENST00000222033 (ZNRF4-001) 5455431-5456856 protein_coding
ENSG00000130254 (SAFB2)
scaffold attachment factor B2 		ENST00000252542 (SAFB2-001) 5586999-5622980 protein_coding
ENST00000585449 (SAFB2-011) 5598485-5600172 retained_intron
ENST00000587802 (SAFB2-010) 5587110-5589020 processed_transcript
ENST00000589925 (SAFB2-008) 5587868-5593705 processed_transcript
ENST00000590000 (SAFB2-009) 5591296-5592881 retained_intron
ENST00000590262 (SAFB2-004) 5612520-5624046 protein_coding
ENST00000591101 (SAFB2-007) 5600214-5610235 retained_intron
ENST00000591120 (SAFB2-002) 5611876-5622776 nonsense_mediated_decay
ENST00000591123 (SAFB2-005) 5598832-5616278 nonsense_mediated_decay
ENST00000591310 (SAFB2-006) 5600226-5610611 processed_transcript
ENST00000592599 (SAFB2-003) 5600200-5612473 retained_intron
ENSG00000160633 (SAFB)
scaffold attachment factor B 		ENST00000292123 (SAFB-003) 5623099-5668478 protein_coding
ENST00000454510 (SAFB-004) 5623139-5668327 protein_coding
ENST00000586281 (SAFB-012) 5664129-5664762 retained_intron
ENST00000586934 (SAFB-006) 5623121-5653242 processed_transcript
ENST00000588852 (SAFB-002) 5623153-5668326 protein_coding
ENST00000589006 (SAFB-011) 5657325-5664136 protein_coding
ENST00000589863 (SAFB-005) 5623035-5668349 nonsense_mediated_decay
ENST00000590485 (SAFB-007) 5641851-5648404 retained_intron
ENST00000591666 (SAFB-008) 5623083-5648187 retained_intron
ENST00000591991 (SAFB-014) 5664726-5668471 retained_intron
ENST00000592224 (SAFB-001) 5623118-5668466 protein_coding
ENST00000592396 (SAFB-010) 5649684-5653420 retained_intron
ENST00000592555 (SAFB-013) 5666656-5668478 retained_intron
ENST00000592707 (SAFB-009) 5648855-5653264 retained_intron
ENSG00000223573 (TINCR)
tissue differentiation-inducing non-protein coding RNA 		ENST00000448587 (TINCR-001) 5558167-5568034 lincRNA
ENST00000587632 (TINCR-002) 5561632-5567831 lincRNA
ENST00000590789 (TINCR-003) 5561034-5562298 lincRNA
ENSG00000233270 (SNRPEP4)
small nuclear ribonucleoprotein polypeptide E pseudogene 4 		ENST00000435815 (SNRPEP4-001) 5576660-5576938 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0003JF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000044526-ENSMUSG00000042625 CGP 10090 17:56511248-56584585
GeneTranscriptPositionBiotype
ENSMUSG00000042625 (Safb2)
scaffold attachment factor B2 		ENSMUST00000075510 (Safb2-001) 56562939-56584585 protein_coding
ENSMUST00000124111 (Safb2-007) 56560973-56564567 protein_coding
ENSMUST00000124457 (Safb2-011) 56568895-56575097 retained_intron
ENSMUST00000127947 (Safb2-013) 56567533-56569434 retained_intron
ENSMUST00000131056 (Safb2-014) 56565997-56571438 protein_coding
ENSMUST00000133604 (Safb2-004) 56568991-56584524 nonsense_mediated_decay
ENSMUST00000134497 (Safb2-012) 56571026-56571677 retained_intron
ENSMUST00000134741 (Safb2-005) 56570081-56575519 retained_intron
ENSMUST00000140037 (Safb2-010) 56576331-56583046 retained_intron
ENSMUST00000142752 (Safb2-017) 56560965-56564516 protein_coding
ENSMUST00000142940 (Safb2-006) 56562939-56567015 protein_coding
ENSMUST00000144255 (Safb2-003) 56562939-56584512 nonsense_mediated_decay
ENSMUST00000146070 (Safb2-008) 56578873-56584511 retained_intron
ENSMUST00000146958 (Safb2-009) 56576460-56584301 retained_intron
ENSMUST00000154991 (Safb2-015) 56563305-56567018 protein_coding
ENSMUST00000155983 (Safb2-002) 56571268-56584562 nonsense_mediated_decay
ENSMUST00000156640 (Safb2-016) 56562949-56572498 processed_transcript
ENSMUSG00000044526 (Znrf4)
zinc and ring finger 4 		ENSMUST00000052211 (Znrf4-201) 56511248-56512483 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003JF_0001ENSG00000105428ENST00000222033ENSG00000130254ENST00000252542ENST00000585449ENST00000587802ENST00000589925ENST00000590000ENST00000590262ENST00000591101ENST00000591120ENST00000591123ENST00000591310ENST00000592599ENSG00000160633ENST00000292123ENST00000454510ENST00000586281ENST00000586934ENST00000588852ENST00000589006ENST00000589863ENST00000590485ENST00000591666ENST00000591991ENST00000592224ENST00000592396ENST00000592555ENST00000592707ENSG00000223573ENST00000448587ENST00000587632ENST00000590789ENSG00000233270ENST00000435815CIL_0003JF_0002ENSMUSG00000042625ENSMUST00000075510ENSMUST00000124111ENSMUST00000124457ENSMUST00000127947ENSMUST00000131056ENSMUST00000133604ENSMUST00000134497ENSMUST00000134741ENSMUST00000140037ENSMUST00000142752ENSMUST00000142940ENSMUST00000144255ENSMUST00000146070ENSMUST00000146958ENSMUST00000154991ENSMUST00000155983ENSMUST00000156640ENSMUSG00000044526ENSMUST00000052211
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003JF_0001ENSG00000105428ENST00000222033ENSG00000130254ENST00000252542ENST00000587802ENST00000589925ENST00000591101ENST00000591120ENST00000591123ENST00000592599ENSG00000160633ENST00000292123ENST00000586934ENST00000588852ENST00000591991ENST00000592224ENSG00000223573ENST00000448587ENST00000587632ENST00000590789ENSG00000233270ENST00000435815CIL_0003JF_0002ENSMUSG00000042625ENSMUST00000075510ENSMUST00000124111ENSMUST00000124457ENSMUST00000134741ENSMUST00000140037ENSMUST00000142940ENSMUST00000144255ENSMUST00000146070ENSMUST00000146958ENSMUST00000154991ENSMUST00000156640ENSMUSG00000044526ENSMUST00000052211
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000105428 ENST00000222033 N/A 0.025±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 41.848±0.78
ENSG00000130254 ENST00000252542 15.578±0.00 24.341±0.00 4.600±0.00 12.009±11.13 5.389±4.57 12.519±0.00 4.285±4.14 3.054±2.07 3.470±1.89 6.588±0.00 4.982±4.42 18.011±5.36 9.848±2.83 23.187±1.31
ENST00000585449 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587802 N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.920±0.00 N/A N/A N/A N/A
ENST00000589925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.954±0.00 N/A N/A N/A
ENST00000590000 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590262 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591101 N/A N/A N/A 6.077±0.00 12.187±0.00 17.581±0.00 N/A 15.124±0.00 16.071±0.00 10.426±0.00 7.988±0.00 N/A N/A N/A
ENST00000591120 N/A N/A 11.181±0.00 1.887±0.00 N/A 6.772±0.00 0.678±0.00 2.253±0.00 2.534±0.00 4.932±0.00 N/A N/A N/A N/A
ENST00000591123 N/A N/A N/A N/A N/A N/A 7.391±0.00 N/A N/A N/A 4.495±0.00 N/A N/A 16.281±0.00
ENST00000591310 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592599 N/A N/A N/A N/A N/A N/A N/A 1.051±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000160633 ENST00000292123 9.555±0.00 8.558±0.00 N/A N/A 4.750±0.00 N/A N/A 0.659±0.00 N/A N/A N/A 11.054±2.44 7.152±2.39 7.792±0.00
ENST00000454510 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586281 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586934 N/A N/A N/A N/A N/A N/A 2.102±0.00 N/A 4.204±0.00 3.106±0.00 N/A N/A N/A N/A
ENST00000588852 17.642±0.00 14.005±0.00 3.896±0.00 15.156±13.33 11.919±0.00 11.866±10.91 8.071±0.00 19.457±0.00 1.747±0.00 8.777±7.25 18.854±0.00 6.423±5.49 15.866±0.00 24.961±11.75
ENST00000589006 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589863 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590485 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591666 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591991 N/A N/A N/A N/A 0.897±0.00 1.106±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592224 12.654±0.00 14.208±0.00 N/A 9.527±0.00 5.319±4.00 9.924±0.00 9.950±0.00 4.927±1.92 2.204±0.00 2.416±0.00 N/A 22.992±1.99 19.171±3.51 16.268±0.00
ENST00000592396 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592555 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592707 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000223573 ENST00000448587 0.131±0.00 0.616±0.00 N/A 0.931±0.00 0.074±0.04 0.308±0.00 0.034±0.00 0.295±0.00 0.057±0.05 0.837±0.00 0.011±0.00 0.108±0.01 10.841±2.30 1.165±0.00
ENST00000587632 0.283±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.194±0.00 N/A N/A N/A
ENST00000590789 N/A N/A N/A N/A 0.604±0.00 0.841±0.00 0.038±0.00 N/A 0.567±0.00 1.937±0.00 N/A 0.486±0.00 N/A N/A
ENSG00000233270 ENST00000435815 0.047±0.00 0.336±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.476±0.00 0.784±0.00 0.275±0.00 0.170±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000042625 ENSMUST00000075510 7.104±1.88 7.232±0.72 15.031±3.46 17.152±7.02 8.742±2.14 11.086±1.81 4.366±1.04 8.957±0.80 11.498±6.68 19.179±5.67 6.135±1.50 26.464±11.60 15.726±4.36 24.085±3.61
ENSMUST00000124111 N/A 3.791±0.24 N/A 2.623±0.00 4.159±1.68 4.468±0.00 1.783±0.08 N/A N/A N/A N/A 7.737±2.14 N/A N/A
ENSMUST00000124457 N/A N/A N/A 95.928±0.00 N/A N/A N/A N/A N/A N/A N/A 210.809±0.00 91.326±19.02 140.316±0.00
ENSMUST00000127947 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131056 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133604 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134497 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134741 5.269±1.70 N/A N/A 5.487±1.47 4.062±0.89 N/A 2.658±0.31 N/A 4.330±0.02 N/A 3.106±0.40 N/A 10.971±0.16 N/A
ENSMUST00000140037 10.647±2.49 N/A N/A N/A N/A N/A 3.974±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142752 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142940 N/A N/A N/A N/A N/A N/A N/A 8.414±0.46 4.581±0.74 N/A N/A N/A N/A N/A
ENSMUST00000144255 4.025±0.67 5.775±0.65 N/A N/A N/A 5.977±0.75 3.630±0.69 4.328±0.37 3.866±0.00 6.554±0.00 N/A 11.042±1.56 N/A 8.185±0.00
ENSMUST00000146070 N/A N/A N/A 136.954±0.00 N/A N/A N/A N/A N/A N/A N/A 356.780±0.00 129.656±34.02 247.244±0.00
ENSMUST00000146958 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 37.959±0.00 N/A N/A
ENSMUST00000154991 N/A N/A N/A 39.264±19.86 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156640 N/A 36.050±3.95 N/A N/A 39.791±15.63 40.635±6.88 17.298±0.00 25.145±3.15 20.804±6.01 54.943±7.85 N/A 41.977±0.55 N/A N/A
ENSMUSG00000044526 ENSMUST00000052211 N/A N/A N/A 0.049±0.01 0.034±0.01 N/A 0.177±0.05 0.140±0.08 0.017±0.00 0.053±0.01 N/A N/A N/A 430.285±189.69

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