C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000438600 RP11-62E14.2-001 ENSG00000215297 9606 - 9:3364329-3364792 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungOvaryTestisENST00000438600
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Ovary Testis
ENST00000438600 0.025±0.00 0.224±0.00 2.165±0.00 0.108±0.06 0.986±0.00 0.276±0.14 0.066±0.00 0.819±0.80 0.367±0.35 0.773±0.72 0.022±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000NH CIL_0000NH_0001 CGP 9:2720469-3526004
CIL_0009AI CIL_0009AI_0001 VISTA 9:3101031-3702562

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027054 Gm5045-201 processed_pseudogene Mus_musculus 0 235
ENSMUST00000118173 Gm6274-001 processed_pseudogene Mus_musculus 0 226
ENSMUST00000119853 Gm12174-001 processed_pseudogene Mus_musculus 0 224
ENSMUST00000151017 Rpl7-005 retained_intron Mus_musculus 0 224
ENSMUST00000141217 Rpl7-002 retained_intron Mus_musculus 0 224
ENSMUST00000058437 Rpl7-001 protein_coding Mus_musculus 0 224
ENSMUST00000140597 Rpl7-006 processed_transcript Mus_musculus 0 224
ENSMUST00000122189 Gm5392-001 processed_pseudogene Mus_musculus 0 206
ENSMUST00000118692 Gm12090-001 processed_pseudogene Mus_musculus 0 202
ENSMUST00000117062 Gm15159-001 processed_pseudogene Mus_musculus 9.94922e-44 180
ENSMUST00000149566 Rpl7-003 protein_coding Mus_musculus 1e-39 167

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