C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0009AI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1350 VISTA 9606 9:3101031-3702562
GeneTranscriptPositionBiotype
ENSG00000080298 (RFX3)
regulatory factor X, 3 (influences HLA class II expression) 		ENST00000302303 (RFX3-201) 3270930-3489487 protein_coding
ENST00000358730 (RFX3-005) 3247037-3395596 protein_coding
ENST00000381984 (RFX3-001) 3344732-3395588 protein_coding
ENST00000382004 (RFX3-006) 3218297-3525983 protein_coding
ENST00000420720 (RFX3-010) 3323961-3346764 protein_coding
ENST00000442560 (RFX3-009) 3323961-3346764 protein_coding
ENST00000449190 (RFX3-004) 3330317-3526004 protein_coding
ENST00000449234 (RFX3-007) 3247514-3257199 protein_coding
ENST00000451859 (RFX3-002) 3301543-3489428 protein_coding
ENST00000457373 (RFX3-003) 3293084-3489416 protein_coding
ENST00000458034 (RFX3-008) 3257002-3270738 protein_coding
ENST00000617270 (RFX3-202) 3218302-3526001 protein_coding
ENSG00000215297 (RP11-62E14.2)
 ENST00000438600 (RP11-62E14.2-001) 3364329-3364792 processed_pseudogene
ENSG00000226669 (RP11-509J21.4)
 ENST00000438147 (RP11-509J21.4-001) 3684076-3689626 lincRNA
ENSG00000232104 (RFX3-AS1)
RFX3 antisense RNA 1 		ENST00000423112 (RFX3-AS1-001) 3526723-3671634 lincRNA
ENST00000427722 (RFX3-AS1-004) 3668165-3691814 lincRNA
ENST00000457566 (RFX3-AS1-002) 3668086-3671646 lincRNA
ENSG00000236511 (LINC01231)
long intergenic non-protein coding RNA 1231 		ENST00000452746 (LINC01231-001) 3181589-3198517 lincRNA
ENSG00000237359 (RP11-509J21.2)
 ENST00000430387 (RP11-509J21.2-001) 3647335-3648338 lincRNA
ENSG00000279745 (AL365202.1)
 ENST00000624522 (AL365202.1-201) 3452305-3453987 protein_coding
CIL_0009AI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1350 VISTA 10090 19:27604248-28205597
GeneTranscriptPositionBiotype
ENSMUSG00000040929 (Rfx3)
regulatory factor X, 3 (influences HLA class II expression) 		ENSMUST00000046898 (Rfx3-003) 27766441-28011048 protein_coding
ENSMUST00000165566 (Rfx3-201) 27761721-27982948 protein_coding
ENSMUST00000172498 (Rfx3-006) 27768141-27836846 processed_transcript
ENSMUST00000172907 (Rfx3-004) 27768318-28011045 protein_coding
ENSMUST00000173161 (Rfx3-002) 27805143-28011166 retained_intron
ENSMUST00000173863 (Rfx3-005) 27768455-27900895 nonsense_mediated_decay
ENSMUST00000174420 (Rfx3-007) 27867515-28010790 protein_coding
ENSMUST00000174850 (Rfx3-001) 27768139-28011140 protein_coding
ENSMUSG00000092182 (Gm20407)
predicted gene 20407 		ENSMUST00000172891 (Gm20407-001) 27994197-27995693 processed_transcript
ENSMUSG00000092617 (Gm8412)
predicted gene 8412 		ENSMUST00000077493 (Gm8412-001) 27858058-27858497 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0009AI_0001ENSG00000080298ENST00000302303ENST00000358730ENST00000381984ENST00000382004ENST00000420720ENST00000442560ENST00000449190ENST00000449234ENST00000451859ENST00000457373ENST00000458034ENST00000617270ENSG00000215297ENST00000438600ENSG00000226669ENST00000438147ENSG00000232104ENST00000423112ENST00000427722ENST00000457566ENSG00000236511ENST00000452746ENSG00000237359ENST00000430387ENSG00000279745ENST00000624522CIL_0009AI_0002ENSMUSG00000040929ENSMUST00000046898ENSMUST00000165566ENSMUST00000172498ENSMUST00000172907ENSMUST00000173161ENSMUST00000173863ENSMUST00000174420ENSMUST00000174850ENSMUSG00000092182ENSMUST00000172891ENSMUSG00000092617ENSMUST00000077493
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0009AI_0001ENSG00000080298ENST00000302303ENST00000358730ENST00000382004ENST00000449190ENST00000449234ENST00000457373ENST00000458034ENST00000617270ENSG00000215297ENST00000438600ENSG00000226669ENST00000438147ENSG00000232104ENST00000423112ENST00000427722ENST00000457566ENSG00000236511ENST00000452746ENSG00000237359ENST00000430387ENSG00000279745ENST00000624522CIL_0009AI_0002ENSMUSG00000040929ENSMUST00000046898ENSMUST00000165566ENSMUST00000172498ENSMUST00000172907ENSMUST00000173863ENSMUST00000174850ENSMUSG00000092182ENSMUST00000172891ENSMUSG00000092617ENSMUST00000077493
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000080298 ENST00000302303 N/A N/A N/A N/A N/A N/A N/A N/A 2.258±0.00 N/A 0.876±0.00 N/A N/A 5.118±0.00
ENST00000358730 N/A N/A N/A N/A N/A 0.483±0.00 N/A N/A N/A 1.698±0.00 N/A 0.827±0.28 0.166±0.00 N/A
ENST00000381984 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000382004 N/A 0.291±0.00 0.198±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000420720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000442560 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449190 N/A N/A N/A N/A N/A N/A 0.471±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000449234 N/A N/A N/A N/A N/A N/A N/A 1.655±0.00 N/A N/A 1.438±0.00 N/A N/A N/A
ENST00000451859 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457373 N/A N/A N/A N/A 2.962±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000458034 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.036±0.00
ENST00000617270 0.708±0.00 0.829±0.00 0.207±0.00 1.657±0.32 0.758±0.45 0.908±0.00 0.251±0.00 0.293±0.00 0.108±0.00 2.070±0.00 0.863±0.79 0.445±0.24 0.260±0.04 0.943±0.39
ENSG00000215297 ENST00000438600 0.025±0.00 0.224±0.00 2.165±0.00 0.108±0.06 0.986±0.00 0.276±0.14 0.066±0.00 N/A 0.819±0.80 0.367±0.35 N/A 0.773±0.72 N/A 0.022±0.00
ENSG00000226669 ENST00000438147 N/A 0.204±0.00 N/A 0.162±0.00 0.485±0.00 N/A 0.071±0.00 0.071±0.00 0.741±0.00 N/A N/A 0.046±0.01 N/A 0.137±0.00
ENSG00000232104 ENST00000423112 0.077±0.00 N/A N/A N/A N/A 0.024±0.00 0.185±0.00 N/A N/A N/A 0.264±0.00 0.172±0.00 0.091±0.01 N/A
ENST00000427722 0.010±0.00 0.117±0.00 0.987±0.00 N/A N/A 0.018±0.00 N/A 0.042±0.00 0.261±0.09 N/A 0.204±0.00 0.198±0.00 0.090±0.02 1.441±0.91
ENST00000457566 N/A N/A 1.132±0.00 N/A N/A 0.358±0.00 0.178±0.00 N/A 0.407±0.00 N/A 0.081±0.00 0.416±0.00 0.127±0.00 2.841±0.00
ENSG00000236511 ENST00000452746 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.019±0.00 N/A 0.138±0.05
ENSG00000237359 ENST00000430387 N/A 0.044±0.00 N/A 0.201±0.02 0.865±0.00 0.193±0.00 0.403±0.00 N/A 0.320±0.00 1.415±0.00 N/A 0.681±0.64 N/A N/A
ENSG00000279745 ENST00000624522 0.751±0.00 1.500±0.00 N/A 1.352±0.00 1.183±0.00 0.487±0.00 0.790±0.00 1.595±0.00 0.247±0.00 1.187±0.00 0.098±0.00 1.523±1.00 N/A 0.566±0.30
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000040929 ENSMUST00000046898 N/A N/A N/A N/A 0.524±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165566 0.069±0.00 0.478±0.14 N/A 3.139±0.66 0.655±0.09 0.404±0.13 N/A 0.776±0.10 0.131±0.01 N/A 0.098±0.05 1.471±0.67 0.288±0.16 0.567±0.40
ENSMUST00000172498 N/A N/A N/A N/A N/A N/A 0.192±0.00 N/A N/A N/A N/A 1.228±0.00 N/A N/A
ENSMUST00000172907 0.449±0.25 N/A N/A N/A 0.357±0.00 0.531±0.22 0.251±0.05 0.452±0.09 0.132±0.00 0.471±0.00 N/A 1.317±0.26 0.565±0.00 8.182±2.26
ENSMUST00000173161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173863 N/A N/A N/A N/A N/A 0.421±0.00 N/A N/A 0.276±0.00 N/A N/A 2.552±0.39 N/A 4.790±0.73
ENSMUST00000174420 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174850 0.504±0.00 0.304±0.00 N/A 4.696±0.00 N/A 0.154±0.00 0.152±0.00 N/A N/A N/A N/A 1.175±0.19 N/A 5.909±0.45
ENSMUSG00000092182 ENSMUST00000172891 0.119±0.00 N/A N/A N/A N/A 0.309±0.00 0.153±0.04 N/A 0.033±0.00 0.194±0.00 N/A N/A N/A 0.113±0.05
ENSMUSG00000092617 ENSMUST00000077493 0.135±0.02 0.230±0.00 0.028±0.00 0.292±0.12 N/A N/A 0.120±0.00 N/A 0.036±0.00 0.195±0.07 N/A 0.601±0.35 0.041±0.01 0.333±0.00

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