C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcriptional adaptor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000440161 TADA3-004 ENSG00000171148 9606 - 3:9780256-9793011 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000440161
Transcript ID Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000440161 20.522±0.00 10.274±0.00 14.477±0.00 1.791±0.00 7.566±0.00 8.443±0.00 3.349±0.00 24.298±13.15 29.430±0.00 110.757±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WL CIL_0002WL_0001 CGP 3:9731729-9788219
CIL_000243 CIL_000243_0001 CGP 3:9749944-9788219
CIL_0002WT CIL_0002WT_0001 CGP 3:9757342-9793011
CIL_0002WP CIL_0002WP_0001 CGP 3:9779860-9807726

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003713 IDA transcription coactivator activity
GO:0004402 IDA histone acetyltransferase activity
GO:0005515 IPI protein binding
GO:0005622 IDA intracellular
GO:0005634 IDA nucleus
GO:0005671 IDA Ada2/Gcn5/Ada3 transcription activator complex
GO:0006325 TAS chromatin organization
GO:0006351 IEA transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0010628 IMP positive regulation of gene expression
GO:0016922 IPI ligand-dependent nuclear receptor binding
GO:0019904 IPI protein domain specific binding
GO:0030520 TAS intracellular estrogen receptor signaling pathway
GO:0030914 IDA STAGA complex
GO:0033276 IDA transcription factor TFTC complex
GO:0043966 IDA histone H3 acetylation
GO:0045893 IDA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032410 Tada3-001 protein_coding Mus_musculus 0 1727
ENSMUST00000120254 Gm9109-001 processed_pseudogene Mus_musculus 0 1303
ENSMUST00000043333 Tada3-005 protein_coding Mus_musculus 0 1011
ENSMUST00000099118 Tada3-004 protein_coding Mus_musculus 0 957
ENSMUST00000122376 Gm11452-001 processed_pseudogene Mus_musculus 0 776
ENSMUST00000125414 Tada3-006 processed_transcript Mus_musculus 0 673
ENSMUST00000113106 Tada3-002 protein_coding Mus_musculus 0 614
ENSMUST00000113107 Tada3-003 protein_coding Mus_musculus 0 614
ENSMUST00000118225 Gm14314-001 processed_pseudogene Mus_musculus 0 569

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