C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 23
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000440193 NPM1P23-001 ENSG00000242109 9606 - 3:24096512-24097360 transcribed_processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonKidneyMuscleENST00000440193
Transcript ID Adipose Adrenal Brain Colon Kidney Muscle
ENST00000440193 0.087±0.00 0.076±0.00 0.120±0.00 0.012±0.00 0.013±0.00 0.322±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00025B CIL_00025B_0002 CGP 3:23945260-24495282

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 0 603
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 571
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 547
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 529
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 0 527
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 387
ENSMUST00000121029 Gm14776-001 processed_pseudogene Mus_musculus 0 296

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