C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000440419 RP11-164H5.1-001 ENSG00000231744 9606 - 9:124598707-124599580 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonHeartLiverOvaryTestisENST00000440419
Transcript ID Adrenal Bladder Brain Colon Heart Liver Ovary Testis
ENST00000440419 0.028±0.00 0.879±0.00 0.319±0.00 0.444±0.00 0.282±0.00 0.329±0.00 0.160±0.15 0.132±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098L CIL_00098L_0001 VISTA 9:124060941-124661966
CIL_00075I CIL_00075I_0001 CGP 9:124481236-124771310
CIL_00075J CIL_00075J_0001 CGP 9:124517275-124814885

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000183528 RANBP1-001 protein_coding Mus_musculus 0 392
ENSMUST00000115645 Ranbp1-001 protein_coding Mus_musculus 0 392
ENSMUST00000185058 RANBP1-003 protein_coding Mus_musculus 0 377
ENSMUST00000052325 Ranbp1-003 protein_coding Mus_musculus 0 377
ENSMUST00000121155 Gm5391-001 processed_pseudogene Mus_musculus 0 316
ENSMUST00000184634 RANBP1-004 retained_intron Mus_musculus 0 231
ENSMUST00000123073 Ranbp1-004 retained_intron Mus_musculus 0 231
ENSMUST00000185140 RANBP1-002 processed_transcript Mus_musculus 0 213
ENSMUST00000134035 Ranbp1-002 processed_transcript Mus_musculus 0 213

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