C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000441819 AC069257.6-001 ENSG00000237418 9606 - 3:196298061-196298215 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainHeartKidneyOvaryTestisENST00000441819
Transcript ID Adipose Adrenal Brain Heart Kidney Ovary Testis
ENST00000441819 0.116±0.00 0.237±0.00 0.241±0.00 0.203±0.00 0.345±0.00 14.437±13.90 0.105±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QR CIL_0008QR_0001 VISTA 3:195819501-196421470

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117602 Gm15148-001 processed_pseudogene Mus_musculus 1e-33 145
ENSMUST00000115231 Rpl39-001 protein_coding Mus_musculus 5e-33 143
ENSMUST00000142604 Rpl39-ps-002 processed_transcript Mus_musculus 2e-31 137
ENSMUST00000121971 Gm12013-001 processed_pseudogene Mus_musculus 2e-31 137
ENSMUST00000146505 Rpl39-ps-001 transcribed_processed_pseudogene Mus_musculus 1e-29 132
ENSMUST00000121292 Rpl39l-002 protein_coding Mus_musculus 1e-29 132
ENSMUST00000044103 Rpl39l-001 protein_coding Mus_musculus 1e-29 132
ENSMUST00000118985 Gm14541-001 processed_pseudogene Mus_musculus 1e-28 128
ENSMUST00000138799 Rpl39-002 retained_intron Mus_musculus 6e-27 122
ENSMUST00000118637 Gm11694-001 processed_pseudogene Mus_musculus 8e-26 119
ENSMUST00000119534 Gm15067-001 processed_pseudogene Mus_musculus 1e-24 115

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