C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RecQ helicase-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000444129 RECQL-001 ENSG00000004700 9606 - 12:21468911-21501593 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000444129
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000444129 8.404±0.00 6.190±0.00 1.193±0.00 1.505±0.66 2.439±0.00 4.891±2.32 2.403±1.46 3.378±0.00 1.122±0.02 3.796±1.32 4.077±0.00 4.003±2.02 1.909±0.69 3.184±1.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006XQ CIL_0006XQ_0002 CGP 12:21354959-21471252
CIL_0005PY CIL_0005PY_0001 CGP 12:21437615-21501669
CIL_0005PT CIL_0005PT_0001 CGP 12:21468911-21518408

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000733 IDA DNA strand renaturation
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003678 IDA DNA helicase activity
GO:0004003 TAS ATP-dependent DNA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0006200 IEA ATP catabolic process
GO:0006260 IEA DNA replication
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0008026 IEA ATP-dependent helicase activity
GO:0016020 IDA membrane
GO:0032508 IEA DNA duplex unwinding
GO:0036310 IDA annealing helicase activity
GO:0043140 IEA ATP-dependent 3'-5' DNA helicase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111803 Recql-001 protein_coding Mus_musculus 0 1559
ENSMUST00000100832 Recql-002 protein_coding Mus_musculus 0 1517
ENSMUST00000032370 Recql-011 protein_coding Mus_musculus 0 1517
ENSMUST00000129694 Recql-009 protein_coding Mus_musculus 0 372
ENSMUST00000128082 Recql-004 protein_coding Mus_musculus 2e-34 152

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