C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TNF receptor-associated factor 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000444415 TRAF4-009 ENSG00000076604 9606 + 17:28744040-28750037 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000444415
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000444415 0.535±0.00 3.359±0.00 1.322±0.00 2.359±0.24 0.318±0.00 7.384±0.00 4.262±0.00 11.314±0.00 0.428±0.00 12.616±0.00 11.722±5.89 5.809±3.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ZR CIL_0004ZR_0002 CGP 17:28725897-28750958

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0007165 IEA signal transduction
GO:0007250 IEA activation of NF-kappaB-inducing kinase activity
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0042981 IEA regulation of apoptotic process
GO:0046330 IEA positive regulation of JNK cascade
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000017530 Traf4-001 protein_coding Mus_musculus 0 1554
ENSMUST00000149437 Traf4-002 retained_intron Mus_musculus 0 1079
ENSMUST00000160509 Gm6903-001 processed_pseudogene Mus_musculus 0 955
ENSMUST00000148218 Traf4-003 retained_intron Mus_musculus 0 549

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