C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: akirin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000446189 AKIRIN1-004 ENSG00000174574 9606 + 1:38991288-39004761 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastMuscleOvaryPlacentaTestisENST00000446189
Transcript ID Bladder Breast Muscle Ovary Placenta Testis
ENST00000446189 3.545±0.00 2.987±0.00 1.665±0.00 22.156±0.00 14.042±0.00 40.836±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PZ CIL_0008PZ_0001 VISTA 1:38426937-39028462
CIL_0008G7 CIL_0008G7_0001 VISTA 1:38483085-39084457
CIL_0007Q3 CIL_0007Q3_0001 VISTA 1:38525828-39126769
CIL_000990 CIL_000990_0001 VISTA 1:38863737-39466035

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0031965 IDA nuclear membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102636 Akirin1-001 protein_coding Mus_musculus 0 992
ENSMUST00000153472 Akirin1-002 processed_transcript Mus_musculus 0 475
ENSMUST00000173570 Gm6623-001 processed_pseudogene Mus_musculus 0 359
ENSMUST00000174752 Gm6659-001 processed_pseudogene Mus_musculus 0 346
ENSMUST00000119676 Akirin1-ps-001 processed_pseudogene Mus_musculus 0 333

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