C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: upstream binding protein 1 (LBP-1a)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000447368 UBP1-002 ENSG00000153560 9606 - 3:33388339-33440010 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000447368
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000447368 8.447±0.00 10.586±0.00 3.322±0.00 2.476±0.18 7.403±2.26 11.813±5.69 3.124±1.97 5.591±2.58 4.750±0.55 4.233±0.00 0.978±0.23 8.321±3.97 6.305±1.19 9.326±1.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001TS CIL_0001TS_0002 CGP 3:33150042-33403662

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003714 TAS transcription corepressor activity
GO:0005634 TAS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0019079 TAS viral genome replication
GO:0045892 TAS negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000009885 Ubp1-201 protein_coding Mus_musculus 0 2405
ENSMUST00000116492 Ubp1-203 protein_coding Mus_musculus 0 2340
ENSMUST00000084885 Ubp1-202 protein_coding Mus_musculus 0 1219
ENSMUST00000035090 Fbxl2-001 protein_coding Mus_musculus 0 257

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