C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine repetitive matrix 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000447431 SRRM1-201 ENSG00000133226 9606 + 1:24643322-24673262 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000447431
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000447431 8.880±0.00 21.365±0.00 9.701±0.00 5.342±0.00 10.084±0.00 3.687±0.00 9.023±0.00 5.319±0.00 9.790±0.00 4.529±0.00 12.562±3.72 3.317±2.01 18.186±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZX CIL_0007ZX_0001 VISTA 1:24547215-25148615
CIL_0002GR CIL_0002GR_0002 CGP 1:24631716-24844324

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006397 IEA mRNA processing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105861 Srrm1-003 protein_coding Mus_musculus 0 3542
ENSMUST00000030613 Srrm1-002 protein_coding Mus_musculus 0 2071
ENSMUST00000136342 Srrm1-015 protein_coding Mus_musculus 0 2071
ENSMUST00000084846 Srrm1-001 protein_coding Mus_musculus 0 2025
ENSMUST00000150619 Srrm1-007 retained_intron Mus_musculus 0 1633
ENSMUST00000131373 Srrm1-008 protein_coding Mus_musculus 0 747
ENSMUST00000140050 Srrm1-013 protein_coding Mus_musculus 0 630
ENSMUST00000151251 Srrm1-011 retained_intron Mus_musculus 0 573
ENSMUST00000131301 Srrm1-009 nonsense_mediated_decay Mus_musculus 0 468
ENSMUST00000154788 Srrm1-010 retained_intron Mus_musculus 0 449
ENSMUST00000162914 Srrm1-014 retained_intron Mus_musculus 0 409
ENSMUST00000134019 Srrm1-005 processed_transcript Mus_musculus 0 375
ENSMUST00000134854 Srrm1-004 retained_intron Mus_musculus 0 375
ENSMUST00000136409 Srrm1-006 nonsense_mediated_decay Mus_musculus 0 335

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