C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000448213 RP5-837I24.1-001 ENSG00000227288 9606 + 1:81501794-81503468 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartLungMuscleOvaryPlacentaTestisENST00000448213
Transcript ID Brain Colon Heart Lung Muscle Ovary Placenta Testis
ENST00000448213 0.086±0.00 0.024±0.00 0.095±0.00 0.210±0.00 0.057±0.05 0.027±0.00 0.039±0.00 0.029±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00003A CIL_00003A_0002 CGP 1:78889764-81992436
CIL_0007JZ CIL_0007JZ_0001 UCNEbase 1:81231098-81907429
CIL_00003B CIL_00003B_0002 CGP 1:81306160-83999150

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000004780 Arid3b-201 protein_coding Mus_musculus 0 1144
ENSMUST00000098686 Arid3b-002 protein_coding Mus_musculus 0 1144
ENSMUST00000171444 Arid3b-001 protein_coding Mus_musculus 0 1144
ENSMUST00000164035 Arid3b-003 nonsense_mediated_decay Mus_musculus 0 710
ENSMUST00000164010 Arid3b-006 protein_coding Mus_musculus 0 710
ENSMUST00000114165 Arid3b-005 nonsense_mediated_decay Mus_musculus 0 691
ENSMUST00000167670 Arid3b-004 retained_intron Mus_musculus 0 606
ENSDART00000103470 arid3b-201 protein_coding Danio_rerio 0 324
ENSMUST00000171949 Arid3b-009 protein_coding Mus_musculus 0 215
ENSMUST00000170477 Arid3b-007 protein_coding Mus_musculus 0 193

Loading