C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L39 pseudogene 25
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000449384 RPL39P25-001 ENSG00000227271 9606 - 10:75269392-75269545 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENST00000449384
Transcript ID Testis
ENST00000449384 0.366±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JX CIL_0007JX_0001 UCNEbase 10:74418410-76978156
CIL_0008UO CIL_0008UO_0001 VISTA 10:74941035-75542526
CIL_000925 CIL_000925_0001 VISTA 10:74961440-75563087
CIL_00084B CIL_00084B_0001 VISTA 10:75078488-75679926
CIL_0008K8 CIL_0008K8_0001 VISTA 10:75104806-75705881
CIL_0007IE CIL_0007IE_0001 CGP 10:75233969-75401906
CIL_0008KK CIL_0008KK_0001 VISTA 10:75241252-75843906

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121292 Rpl39l-002 protein_coding Mus_musculus 0 187
ENSMUST00000044103 Rpl39l-001 protein_coding Mus_musculus 0 187
ENSMUST00000115231 Rpl39-001 protein_coding Mus_musculus 3e-40 167
ENSMUST00000191066 RP23-127L14.1-001 processed_pseudogene Mus_musculus 1e-39 165
ENSMUST00000142604 Rpl39-ps-002 processed_transcript Mus_musculus 1e-38 161
ENSMUST00000121971 Gm12013-001 processed_pseudogene Mus_musculus 1e-38 161
ENSMUST00000146505 Rpl39-ps-001 transcribed_processed_pseudogene Mus_musculus 5e-38 159
ENSMUST00000117602 Gm15148-001 processed_pseudogene Mus_musculus 5e-38 159
ENSMUST00000118985 Gm14541-001 processed_pseudogene Mus_musculus 4e-34 147
ENSMUST00000121969 Gm11334-001 processed_pseudogene Mus_musculus 1e-33 145
ENSMUST00000119534 Gm15067-001 processed_pseudogene Mus_musculus 6e-32 139
ENSMUST00000138799 Rpl39-002 retained_intron Mus_musculus 3e-30 134
ENSMUST00000118637 Gm11694-001 processed_pseudogene Mus_musculus 1e-29 132

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