C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: latrophilin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000449420 LPHN2-012 ENSG00000117114 9606 + 1:81942969-81991368 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonOvaryPlacentaTestisENST00000449420
Transcript ID Brain Breast Colon Ovary Placenta Testis
ENST00000449420 1.701±0.00 1.671±0.00 1.922±0.00 0.496±0.00 1.724±0.00 0.859±0.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00003A CIL_00003A_0002 CGP 1:78889764-81992436
CIL_0007JZ CIL_0007JZ_0001 UCNEbase 1:81231098-81907429
CIL_00003B CIL_00003B_0002 CGP 1:81306160-83999150

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004888 IEA transmembrane signaling receptor activity
GO:0004930 IEA G-protein coupled receptor activity
GO:0005515 IEA protein binding
GO:0007166 IEA cell surface receptor signaling pathway
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106128 Lphn2-202 protein_coding Mus_musculus 0 4881
ENSMUST00000168352 Lphn2-203 protein_coding Mus_musculus 0 1005
ENSMUST00000131717 Lphn1-006 protein_coding Mus_musculus 0 278
ENSMUST00000152978 Lphn1-005 protein_coding Mus_musculus 0 278
ENSMUST00000132500 Lphn1-004 protein_coding Mus_musculus 0 278
ENSMUST00000045393 Lphn1-003 protein_coding Mus_musculus 0 278
ENSMUST00000124355 Lphn1-002 nonsense_mediated_decay Mus_musculus 0 278
ENSMUST00000141158 Lphn1-001 protein_coding Mus_musculus 0 278
ENSMUST00000098595 Gm10644-201 protein_coding Mus_musculus 1e-23 117
ENSDART00000131113 LPHN3 (2 of 2)-201 protein_coding Danio_rerio 0.000000000005 79

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