C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000450198 SMARCA2-008 ENSG00000080503 9606 + 9:2015374-2060971 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000643 CIL_000643_0002 CGP 9:1050354-2193624
CIL_0007PU CIL_0007PU_0001 VISTA 9:1940936-2542833

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005634 IDA:IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008152 IEA metabolic process
GO:0016818 IEA hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0045111 IDA intermediate filament cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000176030 Smarca2-003 protein_coding Mus_musculus 0 1949
ENSMUST00000025862 Smarca2-001 protein_coding Mus_musculus 0 1949
ENSMUST00000099537 Smarca2-002 nonsense_mediated_decay Mus_musculus 0 1906
ENSMUST00000176769 Smarca2-005 protein_coding Mus_musculus 0 1875
ENSMUST00000176584 Smarca2-012 protein_coding Mus_musculus 0 616

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