C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000080503 SMARCA2 9606 + 9:2015219-2193624 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000302401 SMARCA2-001 2158456-2193621 protein_coding
  ENST00000324954 SMARCA2-201 2157680-2193621 protein_coding
  ENST00000349721 SMARCA2-202 2015219-2193621 protein_coding
  ENST00000357248 SMARCA2-203 2015219-2193621 protein_coding
  ENST00000382183 SMARCA2-013 2158513-2193040 protein_coding
  ENST00000382185 SMARCA2-009 2158509-2193571 protein_coding
  ENST00000382186 SMARCA2-010 2158481-2192752 protein_coding
  ENST00000382194 SMARCA2-004 2029019-2193577 protein_coding
  ENST00000382203 SMARCA2-003 2021945-2193624 protein_coding
  ENST00000416751 SMARCA2-015 2159945-2186228 protein_coding
  ENST00000417599 SMARCA2-012 2158485-2191428 protein_coding
  ENST00000423555 SMARCA2-014 2158464-2182183 protein_coding
  ENST00000439732 SMARCA2-005 2017439-2039574 protein_coding
  ENST00000450198 SMARCA2-008 2015374-2060971 protein_coding
  ENST00000452193 SMARCA2-011 2157680-2186154 protein_coding
  ENST00000457226 SMARCA2-006 2017087-2029221 protein_coding
  ENST00000491574 SMARCA2-007 2032539-2039857 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000324954ENST00000349721ENST00000357248ENST00000382183ENST00000382194
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000324954 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.423±0.00 7.487±0.00 N/A
ENST00000349721 3.435±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.185±0.00 1.271±0.00 3.440±0.43 7.250±0.00
ENST00000357248 N/A N/A 1.296±0.00 5.322±0.00 1.607±0.00 1.773±0.00 N/A N/A 2.130±0.00 N/A N/A 1.760±0.00 N/A N/A
ENST00000382183 11.091±0.00 11.601±0.00 N/A 27.048±0.00 17.965±0.00 N/A N/A N/A N/A N/A N/A 66.797±0.00 N/A 25.129±0.00
ENST00000382194 11.835±0.00 5.285±0.00 2.005±0.00 11.936±9.46 19.345±0.00 10.985±0.00 8.026±5.20 10.319±5.32 3.600±1.21 6.770±5.30 6.272±3.83 15.976±13.96 24.097±15.13 43.002±18.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000643 CIL_000643_0002 CGP 9:1050354-2193624
CIL_0007PU CIL_0007PU_0001 VISTA 9:1940936-2542833

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 TAS negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IDA nuclear chromatin
GO:0001105 IDA RNA polymerase II transcription coactivator activity
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003713 TAS transcription coactivator activity
GO:0004386 IEA helicase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006200 TAS ATP catabolic process
GO:0006338 TAS chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA:TAS regulation of transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0007399 IEA nervous system development
GO:0008094 TAS DNA-dependent ATPase activity
GO:0008152 IEA metabolic process
GO:0008285 IEA negative regulation of cell proliferation
GO:0016514 IDA SWI/SNF complex
GO:0016817 IEA hydrolase activity, acting on acid anhydrides
GO:0016818 IEA hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0030308 IMP negative regulation of cell growth
GO:0035887 IEA aortic smooth muscle cell differentiation
GO:0042393 IEA histone binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045111 IDA intermediate filament cytoskeleton
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0071564 ISS npBAF complex
GO:0071565 ISS nBAF complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008904 smarca2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein_coding Danio_rerio
ENSMUSG00000024921 Smarca2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein_coding Mus_musculus

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