C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025862 Smarca2-001 ENSMUSG00000024921 10090 + 19:26605115-26778321 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025862
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025862 7.565±2.55 7.599±0.93 16.903±11.72 4.383±0.17 3.604±0.48 2.928±1.08 1.746±1.28 12.346±4.78 3.468±0.93 10.903±6.09 6.271±5.45 15.269±3.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000643 CIL_000643_0003 CGP 19:25672420-26778321
CIL_0007PU CIL_0007PU_0002 VISTA 19:26544388-27147098

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0001105 IEA RNA polymerase II transcription coactivator activity
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0006325 TAS chromatin organization
GO:0006334 TAS nucleosome assembly
GO:0006351 IEA transcription, DNA-templated
GO:0007399 IEA nervous system development
GO:0008285 IMP negative regulation of cell proliferation
GO:0016514 TAS SWI/SNF complex
GO:0016818 IEA hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0030308 IEA negative regulation of cell growth
GO:0035887 IMP aortic smooth muscle cell differentiation
GO:0042393 IEA histone binding
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045111 IEA intermediate filament cytoskeleton
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0071564 IDA npBAF complex
GO:0071565 IDA nBAF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000041412 smarca2-001 protein_coding Danio_rerio 0 2194
ENSDART00000003698 SMARCA4 (1 of 2)-201 protein_coding Danio_rerio 0 998
ENST00000302401 SMARCA2-001 protein_coding Homo_sapiens 0 1040
ENST00000324954 SMARCA2-201 protein_coding Homo_sapiens 0 1040
ENST00000344626 SMARCA4-001 protein_coding Homo_sapiens 0 1668
ENST00000349721 SMARCA2-202 protein_coding Homo_sapiens 0 5529
ENST00000357248 SMARCA2-203 protein_coding Homo_sapiens 0 6270
ENST00000382183 SMARCA2-013 protein_coding Homo_sapiens 0 1040
ENST00000382185 SMARCA2-009 protein_coding Homo_sapiens 0 1040
ENST00000382186 SMARCA2-010 protein_coding Homo_sapiens 0 652
ENST00000382194 SMARCA2-004 protein_coding Homo_sapiens 0 6054
ENST00000382203 SMARCA2-003 protein_coding Homo_sapiens 0 5339
ENST00000413806 SMARCA4-201 protein_coding Homo_sapiens 0 1461
ENST00000416751 SMARCA2-015 protein_coding Homo_sapiens 0 774
ENST00000417599 SMARCA2-012 protein_coding Homo_sapiens 0 920
ENST00000423555 SMARCA2-014 protein_coding Homo_sapiens 0 520
ENST00000429416 SMARCA4-007 protein_coding Homo_sapiens 0 1668
ENST00000439732 SMARCA2-005 protein_coding Homo_sapiens 0 551
ENST00000444061 SMARCA4-003 protein_coding Homo_sapiens 0 1927
ENST00000450198 SMARCA2-008 protein_coding Homo_sapiens 0 1949
ENST00000450717 SMARCA4-202 protein_coding Homo_sapiens 0 1668
ENST00000452193 SMARCA2-011 protein_coding Homo_sapiens 0 390
ENST00000457226 SMARCA2-006 protein_coding Homo_sapiens 0 244
ENST00000491574 SMARCA2-007 processed_transcript Homo_sapiens 0 614
ENST00000541122 SMARCA4-005 protein_coding Homo_sapiens 0 1892
ENST00000585799 SMARCA4-011 retained_intron Homo_sapiens 0 1081
ENST00000589677 SMARCA4-004 protein_coding Homo_sapiens 0 1892
ENST00000590574 SMARCA4-002 protein_coding Homo_sapiens 0 1927
ENST00000591545 SMARCA4-009 retained_intron Homo_sapiens 0 1437
ENST00000591595 SMARCA4-010 retained_intron Homo_sapiens 0 1190
ENST00000592158 SMARCA4-018 protein_coding Homo_sapiens 7e-26 121
ENST00000592604 SMARCA4-008 retained_intron Homo_sapiens 0 1330

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