C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000099537 Smarca2-002 ENSMUSG00000024921 10090 + 19:26607270-26778273 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLungMuscleOvaryENSMUST00000099537
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Lung Muscle Ovary
ENSMUST00000099537 3.645±0.46 3.144±0.72 2.844±0.00 4.311±2.47 3.575±0.97 2.297±1.28 2.402±0.14 4.738±0.00 1.348±0.00 7.005±3.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000643 CIL_000643_0003 CGP 19:25672420-26778321
CIL_0007PU CIL_0007PU_0002 VISTA 19:26544388-27147098

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0006325 TAS chromatin organization
GO:0006334 TAS nucleosome assembly
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008285 IMP negative regulation of cell proliferation
GO:0016514 TAS SWI/SNF complex
GO:0016818 IEA hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0035887 IMP aortic smooth muscle cell differentiation
GO:0042393 IEA histone binding
GO:0071564 IDA npBAF complex
GO:0071565 IDA nBAF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000041412 smarca2-001 protein_coding Danio_rerio 0 2004
ENSDART00000003698 SMARCA4 (1 of 2)-201 protein_coding Danio_rerio 0 998
ENST00000302401 SMARCA2-001 protein_coding Homo_sapiens 0 621
ENST00000324954 SMARCA2-201 protein_coding Homo_sapiens 0 621
ENST00000344626 SMARCA4-001 protein_coding Homo_sapiens 0 1668
ENST00000349721 SMARCA2-202 protein_coding Homo_sapiens 0 5433
ENST00000357248 SMARCA2-203 protein_coding Homo_sapiens 0 5339
ENST00000382183 SMARCA2-013 protein_coding Homo_sapiens 0 568
ENST00000382185 SMARCA2-009 protein_coding Homo_sapiens 0 621
ENST00000382186 SMARCA2-010 protein_coding Homo_sapiens 0 394
ENST00000382194 SMARCA2-004 protein_coding Homo_sapiens 0 5313
ENST00000382203 SMARCA2-003 protein_coding Homo_sapiens 0 5433
ENST00000413806 SMARCA4-201 protein_coding Homo_sapiens 0 1461
ENST00000416751 SMARCA2-015 protein_coding Homo_sapiens 0 300
ENST00000417599 SMARCA2-012 protein_coding Homo_sapiens 0 300
ENST00000423555 SMARCA2-014 protein_coding Homo_sapiens 0 300
ENST00000429416 SMARCA4-007 protein_coding Homo_sapiens 0 1668
ENST00000439732 SMARCA2-005 protein_coding Homo_sapiens 0 551
ENST00000444061 SMARCA4-003 protein_coding Homo_sapiens 0 1927
ENST00000450198 SMARCA2-008 protein_coding Homo_sapiens 0 1906
ENST00000450717 SMARCA4-202 protein_coding Homo_sapiens 0 1668
ENST00000452193 SMARCA2-011 protein_coding Homo_sapiens 0 394
ENST00000457226 SMARCA2-006 protein_coding Homo_sapiens 0 244
ENST00000491574 SMARCA2-007 processed_transcript Homo_sapiens 0 614
ENST00000541122 SMARCA4-005 protein_coding Homo_sapiens 0 1892
ENST00000585799 SMARCA4-011 retained_intron Homo_sapiens 0 1081
ENST00000589677 SMARCA4-004 protein_coding Homo_sapiens 0 1892
ENST00000590574 SMARCA4-002 protein_coding Homo_sapiens 0 1927
ENST00000591545 SMARCA4-009 retained_intron Homo_sapiens 0 1437
ENST00000591595 SMARCA4-010 retained_intron Homo_sapiens 0 1190
ENST00000592158 SMARCA4-018 protein_coding Homo_sapiens 7e-26 121
ENST00000592604 SMARCA4-008 retained_intron Homo_sapiens 0 1330

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