C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: soc-2 suppressor of clear homolog (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000451838 SHOC2-002 ENSG00000108061 9606 + 10:110964851-111013666 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastLiverOvaryPlacentaTestisENST00000451838
Transcript ID Adrenal Breast Liver Ovary Placenta Testis
ENST00000451838 3.765±0.00 2.165±0.00 1.089±0.00 7.585±0.00 1.763±0.38 8.294±3.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q9 CIL_0008Q9_0001 VISTA 10:110384599-110985964
CIL_0006FA CIL_0006FA_0001 CGP 10:110919547-111080907

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025932 Shoc2-201 protein_coding Mus_musculus 0 2235
ENSMUST00000169861 Shoc2-202 protein_coding Mus_musculus 0 2235
ENSMUST00000120183 Gm13590-001 processed_pseudogene Mus_musculus 0 403

Loading