C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATPase type 13A2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000452699 ATP13A2-005 ENSG00000159363 9606 - 1:16985958-17011928 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000452699
Transcript ID Adipose Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000452699 5.069±0.00 8.441±6.72 5.220±0.00 0.954±0.00 1.469±0.00 1.071±0.00 4.758±0.00 6.552±0.00 2.636±0.84 3.898±0.73 3.071±0.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000235 CIL_000235_0002 CGP 1:16985958-17054170

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005764 IDA lysosome
GO:0005765 IDA lysosomal membrane
GO:0006200 IEA ATP catabolic process
GO:0006812 IEA cation transport
GO:0008219 IEA cell death
GO:0016021 IEA integral component of membrane
GO:0016887 NAS:IEA ATPase activity
GO:0019829 IEA cation-transporting ATPase activity
GO:0046872 IEA metal ion binding
GO:0071287 TAS cellular response to manganese ion
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037055 Atp13a2-001 protein_coding Mus_musculus 0 3705
ENSMUST00000127833 Atp13a2-004 protein_coding Mus_musculus 0 3323
ENSMUST00000168047 Atp13a2-008 protein_coding Mus_musculus 0 2228
ENSMUST00000151517 Atp13a2-002 retained_intron Mus_musculus 0 2008
ENSMUST00000125797 Atp13a2-003 retained_intron Mus_musculus 0 1140
ENSMUST00000135117 Atp13a2-006 processed_transcript Mus_musculus 0 963
ENSMUST00000137630 Atp13a2-007 retained_intron Mus_musculus 0 701
ENSMUST00000156995 Atp13a2-005 processed_transcript Mus_musculus 0 418

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