C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: dyskeratosis congenita 1, dyskerin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000452771 DKC1-012 ENSG00000130826 9606 + X:154764925-154769210 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyENST00000452771
Transcript ID Kidney
ENST00000452771 2.039±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003LH CIL_0003LH_0001 CGP X:154675249-154777689
CIL_0003LI CIL_0003LI_0001 CGP X:154762742-154821007

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001522 IEA pseudouridine synthesis
GO:0003723 IEA RNA binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0006396 IEA RNA processing
GO:0009451 IEA RNA modification
GO:0009982 IEA pseudouridine synthase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000140609 Dkc1-006 nonsense_mediated_decay Mus_musculus 0 992
ENSMUST00000131155 Dkc1-011 protein_coding Mus_musculus 0 549
ENSMUST00000033776 Dkc1-001 protein_coding Mus_musculus 0 549
ENSMUST00000131867 Dkc1-004 processed_transcript Mus_musculus 0 545
ENSMUST00000151327 Dkc1-007 retained_intron Mus_musculus 0 449
ENSMUST00000154936 Dkc1-008 processed_transcript Mus_musculus 0 448
ENSMUST00000132000 Dkc1-002 protein_coding Mus_musculus 0 418
ENSMUST00000145222 Dkc1-005 retained_intron Mus_musculus 0 381
ENSMUST00000135389 Dkc1-003 retained_intron Mus_musculus 0 340
ENSMUST00000122236 Gm13776-001 processed_pseudogene Mus_musculus 0 309
ENSMUST00000117596 Gm14035-001 processed_pseudogene Mus_musculus 0 298
ENSMUST00000154422 Dkc1-009 processed_transcript Mus_musculus 0 265
ENSMUST00000153844 Dkc1-012 nonsense_mediated_decay Mus_musculus 0 195

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