C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sperm associated antigen 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000454819 SPAG4-002 ENSG00000061656 9606 + 20:35617024-35619688 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonKidneyMuscleOvaryPlacentaTestisENST00000454819
Transcript ID Adipose Brain Breast Colon Kidney Muscle Ovary Placenta Testis
ENST00000454819 0.477±0.00 0.723±0.00 0.617±0.21 0.237±0.00 0.610±0.00 0.356±0.00 3.944±0.00 1.120±0.46 8.300±5.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0001 VISTA 20:35018152-35620688
CIL_0005FU CIL_0005FU_0001 CGP 20:35615892-35664956

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038860 Spag4-001 protein_coding Mus_musculus 0 736
ENSMUST00000137966 Spag4-005 protein_coding Mus_musculus 0 623
ENSMUST00000136765 Spag4-004 retained_intron Mus_musculus 0 623
ENSMUST00000133511 Spag4-002 retained_intron Mus_musculus 0 580
ENSMUST00000125996 Spag4-003 retained_intron Mus_musculus 0 425
ENSMUST00000149139 Spag4-006 processed_transcript Mus_musculus 0 313

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