C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group nucleosomal binding domain 2 pseudogene 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000456802 HMGN2P16-001 ENSG00000231376 9606 + 9:15588355-15588615 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryENST00000456802
Transcript ID Ovary
ENST00000456802 2.328±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00051U CIL_00051U_0002 CGP 9:15464066-16061663
CIL_0007VI CIL_0007VI_0001 VISTA 9:15574186-16174507

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178676 Gm10182-201 processed_pseudogene Mus_musculus 0 189
ENSMUST00000102552 Hmgn2-003 protein_coding Mus_musculus 0 189
ENSMUST00000102553 Hmgn2-001 protein_coding Mus_musculus 0 189
ENSMUST00000075602 Gm10282-201 protein_coding Mus_musculus 0 189
ENSMUST00000123234 Hmgn2-012 protein_coding Mus_musculus 0 187
ENSMUST00000125266 Hmgn2-011 processed_transcript Mus_musculus 0 187
ENSMUST00000137456 Hmgn2-010 processed_transcript Mus_musculus 0 187
ENSMUST00000138458 Hmgn2-004 processed_transcript Mus_musculus 0 187
ENSMUST00000105893 Hmgn2-009 protein_coding Mus_musculus 0 187
ENSMUST00000159886 Gm10357-001 processed_pseudogene Mus_musculus 1.4013e-45 185
ENSMUST00000189471 RP24-176P22.2-001 processed_pseudogene Mus_musculus 5.60519e-45 183
ENSMUST00000093430 Gm7125-201 processed_pseudogene Mus_musculus 5.60519e-45 183
ENSMUST00000121537 Gm7931-001 processed_pseudogene Mus_musculus 5.60519e-45 183
ENSMUST00000165525 Gm16494-201 protein_coding Mus_musculus 5.60519e-45 183
ENSMUST00000120483 Gm14008-001 processed_pseudogene Mus_musculus 2.00386e-43 178
ENSMUST00000189273 RP23-429J21.2-001 processed_pseudogene Mus_musculus 3.00018e-42 174
ENSMUST00000120716 Hmgn2-ps1-001 processed_pseudogene Mus_musculus 2e-38 161
ENSMUST00000100472 Hmgn2-007 protein_coding Mus_musculus 2e-38 161
ENSMUST00000071770 Gm5899-201 processed_pseudogene Mus_musculus 7e-34 147
ENSMUST00000153501 Gm16510-001 processed_pseudogene Mus_musculus 9e-33 143
ENSMUST00000130809 Hmgn2-005 retained_intron Mus_musculus 1e-31 139
ENSMUST00000145025 Hmgn2-002 retained_intron Mus_musculus 1e-31 139
ENSMUST00000097278 Gm6594-201 protein_coding Mus_musculus 1e-26 122
ENSMUST00000120954 Gm12196-001 processed_pseudogene Mus_musculus 3e-23 111

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