C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007VI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs306 VISTA 9606 9:15574186-16174507
GeneTranscriptPositionBiotype
ENSG00000164989 (CCDC171)
coiled-coil domain containing 171 		ENST00000380701 (CCDC171-001) 15553086-15974039 protein_coding
ENST00000432954 (CCDC171-008) 15777768-15876083 protein_coding
ENST00000449575 (CCDC171-003) 15744505-15886805 protein_coding
ENST00000470191 (CCDC171-005) 15845639-15971897 processed_transcript
ENST00000472806 (CCDC171-007) 15887795-15920334 processed_transcript
ENST00000474193 (CCDC171-002) 15553291-15564024 processed_transcript
ENST00000478913 (CCDC171-009) 16042798-16061320 processed_transcript
ENST00000486641 (CCDC171-004) 15874541-16061663 processed_transcript
ENST00000498725 (CCDC171-006) 15850226-15971735 processed_transcript
ENST00000535968 (CCDC171-201) 15552897-15660146 protein_coding
ENSG00000231376 (HMGN2P16)
high mobility group nucleosomal binding domain 2 pseudogene 16 		ENST00000456802 (HMGN2P16-001) 15588355-15588615 processed_pseudogene
CIL_0007VI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs306 VISTA 10090 4:83494853-84095171
GeneTranscriptPositionBiotype
ENSMUSG00000052407 (Ccdc171)
coiled-coil domain containing 171 		ENSMUST00000053414 (Ccdc171-001) 83525545-83864670 protein_coding
ENSMUST00000107202 (Ccdc171-003) 83549660-83558841 processed_transcript
ENSMUST00000125077 (Ccdc171-006) 83525639-83864585 nonsense_mediated_decay
ENSMUST00000126429 (Ccdc171-002) 83525614-83555378 protein_coding
ENSMUST00000183729 (Ccdc171-005) 83695955-83798676 processed_transcript
ENSMUSG00000066116 (Gm10154)
predicted gene 10154 		ENSMUST00000084445 (Gm10154-001) 83505185-83505538 processed_pseudogene
ENSMUSG00000080793 (Cbx3-ps3)
chromobox 3, pseudogene 3 		ENSMUST00000118595 (Cbx3-ps3-001) 83701084-83702036 processed_pseudogene
ENSMUSG00000082416 (Gm11414)
predicted gene 11414 		ENSMUST00000121795 (Gm11414-001) 83500499-83500761 processed_pseudogene
ENSMUSG00000085217 (6030471H07Rik)
RIKEN cDNA 6030471H07 gene 		ENSMUST00000125884 (6030471H07Rik-001) 84042039-84044879 lincRNA
ENSMUSG00000085378 (Gm11415)
predicted gene 11415 		ENSMUST00000128214 (Gm11415-001) 83884738-83888858 lincRNA
ENSMUSG00000097942 (Gm26968)
predicted gene, 26968 		ENSMUST00000182894 (Gm26968-001) 83743677-83744157 sense_intronic
ENSMUSG00000098217 (Gm27046)
predicted gene, 27046 		ENSMUST00000182160 (Gm27046-001) 83597303-83597765 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007VI_0001ENSG00000164989ENST00000380701ENST00000432954ENST00000449575ENST00000470191ENST00000472806ENST00000474193ENST00000478913ENST00000486641ENST00000498725ENST00000535968ENSG00000231376ENST00000456802CIL_0007VI_0002ENSMUSG00000052407ENSMUST00000053414ENSMUST00000107202ENSMUST00000125077ENSMUST00000126429ENSMUST00000183729ENSMUSG00000066116ENSMUST00000084445ENSMUSG00000080793ENSMUST00000118595ENSMUSG00000082416ENSMUST00000121795ENSMUSG00000085217ENSMUST00000125884ENSMUSG00000085378ENSMUST00000128214ENSMUSG00000097942ENSMUST00000182894ENSMUSG00000098217ENSMUST00000182160
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007VI_0001ENSG00000164989ENST00000380701ENST00000432954ENST00000449575ENST00000470191ENST00000535968ENSG00000231376ENST00000456802CIL_0007VI_0002ENSMUSG00000052407ENSMUST00000053414ENSMUST00000107202ENSMUST00000125077ENSMUST00000126429ENSMUST00000183729ENSMUSG00000066116ENSMUST00000084445ENSMUSG00000080793ENSMUST00000118595ENSMUSG00000082416ENSMUST00000121795ENSMUSG00000085217ENSMUST00000125884ENSMUSG00000085378ENSMUST00000128214ENSMUSG00000097942ENSMUST00000182894ENSMUSG00000098217ENSMUST00000182160
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000164989 ENST00000380701 0.086±0.00 0.077±0.00 N/A 0.195±0.00 0.162±0.00 0.186±0.09 0.077±0.00 0.209±0.00 0.006±0.00 0.017±0.00 0.078±0.00 0.044±0.00 0.160±0.00 0.638±0.00
ENST00000432954 N/A 0.061±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449575 N/A 0.183±0.00 N/A 0.207±0.00 N/A N/A N/A N/A 0.018±0.00 N/A N/A N/A 0.045±0.00 N/A
ENST00000470191 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.337±0.00 N/A 1.013±0.00 0.255±0.00 7.964±0.00
ENST00000472806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474193 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478913 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486641 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498725 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535968 N/A N/A N/A N/A N/A 0.085±0.00 0.025±0.00 N/A 0.013±0.00 0.457±0.00 0.106±0.00 0.091±0.00 N/A N/A
ENSG00000231376 ENST00000456802 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.328±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000052407 ENSMUST00000053414 N/A 0.267±0.12 N/A 0.691±0.00 0.389±0.12 0.350±0.08 0.166±0.05 0.247±0.14 0.196±0.08 0.508±0.21 0.106±0.01 0.837±0.29 0.384±0.00 6.266±1.67
ENSMUST00000107202 N/A N/A N/A 0.261±0.00 0.689±0.00 0.430±0.00 N/A N/A N/A N/A N/A 0.816±0.00 N/A N/A
ENSMUST00000125077 0.290±0.00 N/A 0.460±0.00 0.421±0.00 0.268±0.02 N/A 0.088±0.00 0.138±0.03 0.223±0.06 N/A 0.116±0.04 0.475±0.38 0.284±0.15 5.497±4.56
ENSMUST00000126429 N/A 0.205±0.00 N/A N/A N/A 0.207±0.00 N/A N/A N/A N/A 0.077±0.00 N/A N/A N/A
ENSMUST00000183729 N/A 0.150±0.00 N/A 0.474±0.00 N/A N/A 0.186±0.00 N/A N/A 0.423±0.00 0.129±0.01 0.530±0.14 N/A N/A
ENSMUSG00000066116 ENSMUST00000084445 N/A N/A N/A 0.170±0.09 N/A N/A N/A N/A 0.073±0.00 N/A 0.208±0.00 0.275±0.00 0.290±0.23 N/A
ENSMUSG00000080793 ENSMUST00000118595 N/A N/A 0.056±0.00 0.018±0.00 N/A N/A N/A N/A 0.104±0.11 N/A 0.062±0.00 0.111±0.03 0.034±0.01 0.094±0.05
ENSMUSG00000082416 ENSMUST00000121795 N/A N/A N/A 0.292±0.12 N/A N/A N/A N/A N/A N/A N/A N/A 0.439±0.43 0.409±0.01
ENSMUSG00000085217 ENSMUST00000125884 N/A N/A N/A N/A 0.300±0.00 N/A N/A N/A N/A N/A N/A 0.118±0.00 0.012±0.00 0.195±0.11
ENSMUSG00000085378 ENSMUST00000128214 N/A N/A N/A N/A N/A N/A N/A N/A 0.025±0.00 N/A N/A N/A N/A 0.208±0.14
ENSMUSG00000097942 ENSMUST00000182894 N/A N/A N/A 0.025±0.00 N/A N/A N/A N/A 0.043±0.02 N/A N/A N/A 0.018±0.00 N/A
ENSMUSG00000098217 ENSMUST00000182160 N/A N/A N/A N/A N/A 0.186±0.00 N/A N/A 0.027±0.01 N/A N/A N/A N/A 0.138±0.04

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