| Source ID |
Type |
Tax ID |
Position |
| ENSDARG00000077405-ENSDARG00000027381 |
CGP |
7955 |
23:44907805-44966494  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_00051U_0001 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_00051U_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00051U_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSDARG00000027381' => 'coiled-coil domain containing 171',
'ENSDARG00000077405' => 'PC4 and SFRS1 interacting protein 1',
'ENSG00000164975' => 'small nuclear RNA activating complex, polypeptide 3, 50kDa',
'ENSG00000164985' => 'PC4 and SFRS1 interacting protein 1',
'ENSG00000164989' => 'coiled-coil domain containing 171',
'ENSG00000207360' => 'RNA, U6 small nuclear 14, pseudogene',
'ENSG00000207433' => 'RNA, U6 small nuclear 246, pseudogene',
'ENSG00000213362' => 'ferritin, heavy polypeptide 1 pseudogene 12',
'ENSG00000231376' => 'high mobility group nucleosomal binding domain 2 pseudogene 16',
'ENSG00000240613' => 'RNA, 7SL, cytoplasmic 98, pseudogene',
'ENSG00000278754' => null,
'ENSMUSG00000028483' => 'small nuclear RNA activating complex, polypeptide 3',
'ENSMUSG00000028484' => 'PC4 and SFRS1 interacting protein 1',
'ENSMUSG00000052407' => 'coiled-coil domain containing 171',
'ENSMUSG00000064606' => 'predicted gene, 25899',
'ENSMUSG00000066116' => 'predicted gene 10154',
'ENSMUSG00000080793' => 'chromobox 3, pseudogene 3',
'ENSMUSG00000082416' => 'predicted gene 11414',
'ENSMUSG00000097942' => 'predicted gene, 26968',
'ENSMUSG00000098217' => 'predicted gene, 27046'
),
'gene_name_arr' => array(
'ENSDARG00000027381' => 'CCDC171',
'ENSDARG00000077405' => 'si:ch211-116m6.3',
'ENSG00000164975' => 'SNAPC3',
'ENSG00000164985' => 'PSIP1',
'ENSG00000164989' => 'CCDC171',
'ENSG00000207360' => 'RNU6-14P',
'ENSG00000207433' => 'RNU6-246P',
'ENSG00000213362' => 'FTH1P12',
'ENSG00000231376' => 'HMGN2P16',
'ENSG00000240613' => 'RN7SL98P',
'ENSG00000278754' => 'RP11-518K17.4',
'ENSMUSG00000028483' => 'Snapc3',
'ENSMUSG00000028484' => 'Psip1',
'ENSMUSG00000052407' => 'Ccdc171',
'ENSMUSG00000064606' => 'Gm25899',
'ENSMUSG00000066116' => 'Gm10154',
'ENSMUSG00000080793' => 'Cbx3-ps3',
'ENSMUSG00000082416' => 'Gm11414',
'ENSMUSG00000097942' => 'Gm26968',
'ENSMUSG00000098217' => 'Gm27046'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 23 => 'Bladder',
(int) 28 => 'Brain',
(int) 51 => 'Breast',
(int) 67 => 'Colon',
(int) 78 => 'Heart',
(int) 93 => 'Kidney',
(int) 107 => 'Liver',
(int) 126 => 'Lung',
(int) 143 => 'Muscle',
(int) 159 => 'Ovary',
(int) 179 => 'Placenta',
(int) 197 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 67,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENSDART00000036644' => array(
'start' => '44938544',
'end' => '44949496',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC171-201'
),
'ENSDART00000102447' => array(
'start' => '44938544',
'end' => '44951273',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC171-202'
),
'ENSDART00000148726' => array(
'start' => '44934781',
'end' => '44966494',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC171-001'
),
'ENSDART00000102441' => array(
'start' => '44923180',
'end' => '44934393',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:ch211-116m6.3-201'
),
'ENSDART00000111126' => array(
'start' => '44924101',
'end' => '44934092',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:ch211-116m6.3-202'
),
'ENSDART00000149410' => array(
'start' => '44907805',
'end' => '44934536',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:ch211-116m6.3-001'
),
'ENST00000380799' => array(
'start' => '15447112',
'end' => '15453577',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNAPC3-005'
),
'ENST00000380821' => array(
'start' => '15422704',
'end' => '15464134',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNAPC3-002'
),
'ENST00000421710' => array(
'start' => '15422879',
'end' => '15453104',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNAPC3-006'
),
'ENST00000461041' => array(
'start' => '15423142',
'end' => '15433824',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SNAPC3-004'
),
'ENST00000467062' => array(
'start' => '15422734',
'end' => '15465953',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SNAPC3-001'
),
'ENST00000490969' => array(
'start' => '15422869',
'end' => '15462460',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SNAPC3-003'
),
'ENST00000610884' => array(
'start' => '15422734',
'end' => '15465832',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNAPC3-201'
),
'ENST00000380715' => array(
'start' => '15470636',
'end' => '15510991',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSIP1-006'
),
'ENST00000380716' => array(
'start' => '15470636',
'end' => '15510994',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSIP1-007'
),
'ENST00000380733' => array(
'start' => '15464066',
'end' => '15511019',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSIP1-003'
),
'ENST00000380738' => array(
'start' => '15464066',
'end' => '15510995',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSIP1-004'
),
'ENST00000397519' => array(
'start' => '15470646',
'end' => '15510289',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSIP1-201'
),
'ENST00000463712' => array(
'start' => '15489270',
'end' => '15510946',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PSIP1-010'
),
'ENST00000481862' => array(
'start' => '15470990',
'end' => '15472750',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSIP1-005'
),
'ENST00000484265' => array(
'start' => '15504959',
'end' => '15510989',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PSIP1-008'
),
'ENST00000487363' => array(
'start' => '15485903',
'end' => '15510289',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PSIP1-009'
),
'ENST00000488797' => array(
'start' => '15491952',
'end' => '15510991',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PSIP1-001'
),
'ENST00000495873' => array(
'start' => '15472081',
'end' => '15474201',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PSIP1-002'
),
'ENST00000380701' => array(
'start' => '15553086',
'end' => '15974039',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC171-001'
),
'ENST00000432954' => array(
'start' => '15777768',
'end' => '15876083',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC171-008'
),
'ENST00000449575' => array(
'start' => '15744505',
'end' => '15886805',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC171-003'
),
'ENST00000470191' => array(
'start' => '15845639',
'end' => '15971897',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CCDC171-005'
),
'ENST00000472806' => array(
'start' => '15887795',
'end' => '15920334',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CCDC171-007'
),
'ENST00000474193' => array(
'start' => '15553291',
'end' => '15564024',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CCDC171-002'
),
'ENST00000478913' => array(
'start' => '16042798',
'end' => '16061320',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CCDC171-009'
),
'ENST00000486641' => array(
'start' => '15874541',
'end' => '16061663',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CCDC171-004'
),
'ENST00000498725' => array(
'start' => '15850226',
'end' => '15971735',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CCDC171-006'
),
'ENST00000535968' => array(
'start' => '15552897',
'end' => '15660146',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC171-201'
),
'ENST00000384630' => array(
'start' => '15776181',
'end' => '15776286',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-14P-201'
),
'ENST00000384702' => array(
'start' => '15544188',
'end' => '15544294',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-246P-201'
),
'ENST00000432137' => array(
'start' => '15527133',
'end' => '15527683',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'FTH1P12-001'
),
'ENST00000456802' => array(
'start' => '15588355',
'end' => '15588615',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'HMGN2P16-001'
),
'ENST00000462271' => array(
'start' => '15525782',
'end' => '15526081',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL98P-201'
),
'ENST00000621695' => array(
'start' => '15524576',
'end' => '15524707',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-518K17.4-001'
),
'ENSMUST00000030206' => array(
'start' => '83417724',
'end' => '83453340',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Snapc3-006'
),
'ENSMUST00000071544' => array(
'start' => '83417731',
'end' => '83442086',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Snapc3-003'
),
'ENSMUST00000123262' => array(
'start' => '83417724',
'end' => '83461846',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Snapc3-005'
),
'ENSMUST00000124856' => array(
'start' => '83417744',
'end' => '83467219',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Snapc3-004'
),
'ENSMUST00000130676' => array(
'start' => '83463976',
'end' => '83467211',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Snapc3-007'
),
'ENSMUST00000137512' => array(
'start' => '83417744',
'end' => '83454033',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Snapc3-002'
),
'ENSMUST00000143533' => array(
'start' => '83417749',
'end' => '83467676',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Snapc3-001'
),
'ENSMUST00000159518' => array(
'start' => '83453806',
'end' => '83467166',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Snapc3-009'
),
'ENSMUST00000160742' => array(
'start' => '83453954',
'end' => '83466127',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Snapc3-008'
),
'ENSMUST00000030207' => array(
'start' => '83455680',
'end' => '83486459',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Psip1-001'
),
'ENSMUST00000107214' => array(
'start' => '83461871',
'end' => '83486453',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Psip1-003'
),
'ENSMUST00000107215' => array(
'start' => '83461871',
'end' => '83486458',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Psip1-002'
),
'ENSMUST00000126706' => array(
'start' => '83461871',
'end' => '83464964',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Psip1-004'
),
'ENSMUST00000130626' => array(
'start' => '83476298',
'end' => '83486178',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Psip1-006'
),
'ENSMUST00000144349' => array(
'start' => '83462830',
'end' => '83465043',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Psip1-005'
),
'ENSMUST00000152382' => array(
'start' => '83458075',
'end' => '83460292',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Psip1-008'
),
'ENSMUST00000053414' => array(
'start' => '83525545',
'end' => '83864670',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ccdc171-001'
),
'ENSMUST00000107202' => array(
'start' => '83549660',
'end' => '83558841',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ccdc171-003'
),
'ENSMUST00000125077' => array(
'start' => '83525639',
'end' => '83864585',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Ccdc171-006'
),
'ENSMUST00000126429' => array(
'start' => '83525614',
'end' => '83555378',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ccdc171-002'
),
'ENSMUST00000183729' => array(
'start' => '83695955',
'end' => '83798676',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ccdc171-005'
),
'ENSMUST00000082672' => array(
'start' => '83527628',
'end' => '83527768',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm25899-201'
),
'ENSMUST00000084445' => array(
'start' => '83505185',
'end' => '83505538',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm10154-001'
),
'ENSMUST00000118595' => array(
'start' => '83701084',
'end' => '83702036',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Cbx3-ps3-001'
),
'ENSMUST00000121795' => array(
'start' => '83500499',
'end' => '83500761',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm11414-001'
),
'ENSMUST00000182894' => array(
'start' => '83743677',
'end' => '83744157',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'Gm26968-001'
),
'ENSMUST00000182160' => array(
'start' => '83597303',
'end' => '83597765',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm27046-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_00051U_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00051U_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_00051U_0002' => array(
'genes_in_region' => array(
'ENSG00000164985' => array(
[maximum depth reached]
),
'ENSG00000164989' => array(
[maximum depth reached]
),
'ENSG00000213362' => array(
[maximum depth reached]
),
'ENSG00000231376' => array(
[maximum depth reached]
),
'ENSG00000240613' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Heart',
(int) 4 => 'Liver',
(int) 5 => 'Lung',
(int) 6 => 'Muscle',
(int) 7 => 'Ovary',
(int) 8 => 'Placenta',
(int) 9 => 'Brain',
(int) 10 => 'Breast',
(int) 11 => 'Testis',
(int) 12 => 'Breast',
(int) 13 => 'Heart',
(int) 14 => 'Kidney',
(int) 15 => 'Liver',
(int) 16 => 'Lung',
(int) 17 => 'Ovary',
(int) 18 => 'Placenta',
(int) 19 => 'Muscle',
(int) 20 => 'Bladder',
(int) 21 => 'Brain',
(int) 22 => 'Lung',
(int) 23 => 'Adipose',
(int) 24 => 'Brain',
(int) 25 => 'Breast',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Adipose',
(int) 35 => 'Adrenal',
(int) 36 => 'Bladder',
(int) 37 => 'Brain',
(int) 38 => 'Colon',
(int) 39 => 'Liver',
(int) 40 => 'Lung',
(int) 41 => 'Muscle',
(int) 42 => 'Ovary',
(int) 43 => 'Placenta',
(int) 44 => 'Testis',
(int) 45 => 'Brain',
(int) 46 => 'Testis',
(int) 47 => 'Brain',
(int) 48 => 'Adipose',
(int) 49 => 'Adrenal',
(int) 50 => 'Brain',
(int) 51 => 'Breast',
(int) 52 => 'Colon',
(int) 53 => 'Heart',
(int) 54 => 'Kidney',
(int) 55 => 'Liver',
(int) 56 => 'Lung',
(int) 57 => 'Muscle',
(int) 58 => 'Ovary',
(int) 59 => 'Placenta',
(int) 60 => 'Testis',
(int) 61 => 'Adrenal',
(int) 62 => 'Adrenal',
(int) 63 => 'Brain',
(int) 64 => 'Liver',
(int) 65 => 'Placenta',
(int) 66 => 'Lung',
(int) 67 => 'Ovary',
(int) 68 => 'Placenta',
(int) 69 => 'Testis',
(int) 70 => 'Colon',
(int) 71 => 'Heart',
(int) 72 => 'Liver',
(int) 73 => 'Lung',
(int) 74 => 'Muscle',
(int) 75 => 'Ovary',
(int) 76 => 'Adipose',
(int) 77 => 'Adrenal',
(int) 78 => 'Brain',
(int) 79 => 'Breast',
(int) 80 => 'Colon',
(int) 81 => 'Heart',
(int) 82 => 'Kidney',
(int) 83 => 'Liver',
(int) 84 => 'Lung',
(int) 85 => 'Muscle',
(int) 86 => 'Ovary',
(int) 87 => 'Placenta',
(int) 88 => 'Testis',
(int) 89 => 'Ovary',
(int) 90 => 'Adrenal',
(int) 91 => 'Testis'
)
),
'CIL_00051U_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000028483' => array(
[maximum depth reached]
),
'ENSMUSG00000028484' => array(
[maximum depth reached]
),
'ENSMUSG00000052407' => array(
[maximum depth reached]
),
'ENSMUSG00000066116' => array(
[maximum depth reached]
),
'ENSMUSG00000080793' => array(
[maximum depth reached]
),
'ENSMUSG00000082416' => array(
[maximum depth reached]
),
'ENSMUSG00000097942' => array(
[maximum depth reached]
),
'ENSMUSG00000098217' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Breast',
(int) 2 => 'Heart',
(int) 3 => 'Kidney',
(int) 4 => 'Liver',
(int) 5 => 'Lung',
(int) 6 => 'Muscle',
(int) 7 => 'Adrenal',
(int) 8 => 'Breast',
(int) 9 => 'Colon',
(int) 10 => 'Breast',
(int) 11 => 'Kidney',
(int) 12 => 'Lung',
(int) 13 => 'Adipose',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Lung',
(int) 21 => 'Muscle',
(int) 22 => 'Ovary',
(int) 23 => 'Placenta',
(int) 24 => 'Testis',
(int) 25 => 'Adipose',
(int) 26 => 'Adrenal',
(int) 27 => 'Brain',
(int) 28 => 'Breast',
(int) 29 => 'Colon',
(int) 30 => 'Heart',
(int) 31 => 'Liver',
(int) 32 => 'Lung',
(int) 33 => 'Muscle',
(int) 34 => 'Ovary',
(int) 35 => 'Placenta',
(int) 36 => 'Adipose',
(int) 37 => 'Adrenal',
(int) 38 => 'Brain',
(int) 39 => 'Breast',
(int) 40 => 'Colon',
(int) 41 => 'Kidney',
(int) 42 => 'Liver',
(int) 43 => 'Lung',
(int) 44 => 'Ovary',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Adipose',
(int) 48 => 'Breast',
(int) 49 => 'Kidney',
(int) 50 => 'Lung',
(int) 51 => 'Ovary',
(int) 52 => 'Testis',
(int) 53 => 'Ovary',
(int) 54 => 'Placenta',
(int) 55 => 'Testis',
(int) 56 => 'Adrenal',
(int) 57 => 'Brain',
(int) 58 => 'Breast',
(int) 59 => 'Colon',
(int) 60 => 'Heart',
(int) 61 => 'Kidney',
(int) 62 => 'Liver',
(int) 63 => 'Lung',
(int) 64 => 'Muscle',
(int) 65 => 'Ovary',
(int) 66 => 'Placenta',
(int) 67 => 'Testis',
(int) 68 => 'Brain',
(int) 69 => 'Breast',
(int) 70 => 'Colon',
(int) 71 => 'Ovary',
(int) 72 => 'Adipose',
(int) 73 => 'Bladder',
(int) 74 => 'Brain',
(int) 75 => 'Breast',
(int) 76 => 'Heart',
(int) 77 => 'Kidney',
(int) 78 => 'Liver',
(int) 79 => 'Muscle',
(int) 80 => 'Ovary',
(int) 81 => 'Placenta',
(int) 82 => 'Testis',
(int) 83 => 'Adrenal',
(int) 84 => 'Colon',
(int) 85 => 'Muscle',
(int) 86 => 'Adrenal',
(int) 87 => 'Brain',
(int) 88 => 'Heart',
(int) 89 => 'Lung',
(int) 90 => 'Muscle',
(int) 91 => 'Ovary',
(int) 92 => 'Brain',
(int) 93 => 'Liver',
(int) 94 => 'Muscle',
(int) 95 => 'Ovary',
(int) 96 => 'Placenta',
(int) 97 => 'Bladder',
(int) 98 => 'Brain',
(int) 99 => 'Liver',
(int) 100 => 'Muscle',
(int) 101 => 'Ovary',
(int) 102 => 'Placenta',
(int) 103 => 'Testis',
(int) 104 => 'Brain',
(int) 105 => 'Placenta',
(int) 106 => 'Testis',
(int) 107 => 'Brain',
(int) 108 => 'Liver',
(int) 109 => 'Placenta',
(int) 110 => 'Colon',
(int) 111 => 'Liver',
(int) 112 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSDARG00000027381' => 'coiled-coil domain containing 171',
'ENSDARG00000077405' => 'PC4 and SFRS1 interacting protein 1',
'ENSG00000164975' => 'small nuclear RNA activating complex, polypeptide 3, 50kDa',
'ENSG00000164985' => 'PC4 and SFRS1 interacting protein 1',
'ENSG00000164989' => 'coiled-coil domain containing 171',
'ENSG00000207360' => 'RNA, U6 small nuclear 14, pseudogene',
'ENSG00000207433' => 'RNA, U6 small nuclear 246, pseudogene',
'ENSG00000213362' => 'ferritin, heavy polypeptide 1 pseudogene 12',
'ENSG00000231376' => 'high mobility group nucleosomal binding domain 2 pseudogene 16',
'ENSG00000240613' => 'RNA, 7SL, cytoplasmic 98, pseudogene',
'ENSG00000278754' => null,
'ENSMUSG00000028483' => 'small nuclear RNA activating complex, polypeptide 3',
'ENSMUSG00000028484' => 'PC4 and SFRS1 interacting protein 1',
'ENSMUSG00000052407' => 'coiled-coil domain containing 171',
'ENSMUSG00000064606' => 'predicted gene, 25899',
'ENSMUSG00000066116' => 'predicted gene 10154',
'ENSMUSG00000080793' => 'chromobox 3, pseudogene 3',
'ENSMUSG00000082416' => 'predicted gene 11414',
'ENSMUSG00000097942' => 'predicted gene, 26968',
'ENSMUSG00000098217' => 'predicted gene, 27046'
)
$gene_name_arr = array(
'ENSDARG00000027381' => 'CCDC171',
'ENSDARG00000077405' => 'si:ch211-116m6.3',
'ENSG00000164975' => 'SNAPC3',
'ENSG00000164985' => 'PSIP1',
'ENSG00000164989' => 'CCDC171',
'ENSG00000207360' => 'RNU6-14P',
'ENSG00000207433' => 'RNU6-246P',
'ENSG00000213362' => 'FTH1P12',
'ENSG00000231376' => 'HMGN2P16',
'ENSG00000240613' => 'RN7SL98P',
'ENSG00000278754' => 'RP11-518K17.4',
'ENSMUSG00000028483' => 'Snapc3',
'ENSMUSG00000028484' => 'Psip1',
'ENSMUSG00000052407' => 'Ccdc171',
'ENSMUSG00000064606' => 'Gm25899',
'ENSMUSG00000066116' => 'Gm10154',
'ENSMUSG00000080793' => 'Cbx3-ps3',
'ENSMUSG00000082416' => 'Gm11414',
'ENSMUSG00000097942' => 'Gm26968',
'ENSMUSG00000098217' => 'Gm27046'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00051U_0001',
'tax_id' => '7955',
'chromosome' => '23',
'seq_start' => '44907805',
'seq_end' => '44966494',
'region_length' => '58689',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000077405-ENSDARG00000027381'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00051U_0002',
'tax_id' => '9606',
'chromosome' => '9',
'seq_start' => '15464066',
'seq_end' => '16061663',
'region_length' => '597597',
'region_type' => 'CGP',
'el_id' => 'ENSG00000164985-ENSG00000164989'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00051U_0003',
'tax_id' => '10090',
'chromosome' => '4',
'seq_start' => '83455680',
'seq_end' => '83864670',
'region_length' => '408990',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000028484-ENSMUSG00000052407'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 23 => 'Bladder',
(int) 28 => 'Brain',
(int) 51 => 'Breast',
(int) 67 => 'Colon',
(int) 78 => 'Heart',
(int) 93 => 'Kidney',
(int) 107 => 'Liver',
(int) 126 => 'Lung',
(int) 143 => 'Muscle',
(int) 159 => 'Ovary',
(int) 179 => 'Placenta',
(int) 197 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 67
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENSDART00000036644' => array(
'start' => '44938544',
'end' => '44949496',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC171-201'
),
'ENSDART00000102447' => array(
'start' => '44938544',
'end' => '44951273',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC171-202'
),
'ENSDART00000148726' => array(
'start' => '44934781',
'end' => '44966494',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC171-001'
),
'ENSDART00000102441' => array(
'start' => '44923180',
'end' => '44934393',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:ch211-116m6.3-201'
),
'ENSDART00000111126' => array(
'start' => '44924101',
'end' => '44934092',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:ch211-116m6.3-202'
),
'ENSDART00000149410' => array(
'start' => '44907805',
'end' => '44934536',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:ch211-116m6.3-001'
),
'ENST00000380799' => array(
'start' => '15447112',
'end' => '15453577',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNAPC3-005'
),
'ENST00000380821' => array(
'start' => '15422704',
'end' => '15464134',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNAPC3-002'
),
'ENST00000421710' => array(
'start' => '15422879',
'end' => '15453104',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNAPC3-006'
),
'ENST00000461041' => array(
'start' => '15423142',
'end' => '15433824',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SNAPC3-004'
),
'ENST00000467062' => array(
'start' => '15422734',
'end' => '15465953',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SNAPC3-001'
),
'ENST00000490969' => array(
'start' => '15422869',
'end' => '15462460',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SNAPC3-003'
),
'ENST00000610884' => array(
'start' => '15422734',
'end' => '15465832',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNAPC3-201'
),
'ENST00000380715' => array(
'start' => '15470636',
'end' => '15510991',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSIP1-006'
),
'ENST00000380716' => array(
'start' => '15470636',
'end' => '15510994',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSIP1-007'
),
'ENST00000380733' => array(
'start' => '15464066',
'end' => '15511019',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSIP1-003'
),
'ENST00000380738' => array(
'start' => '15464066',
'end' => '15510995',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSIP1-004'
),
'ENST00000397519' => array(
'start' => '15470646',
'end' => '15510289',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSIP1-201'
),
'ENST00000463712' => array(
'start' => '15489270',
'end' => '15510946',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PSIP1-010'
),
'ENST00000481862' => array(
'start' => '15470990',
'end' => '15472750',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSIP1-005'
),
'ENST00000484265' => array(
'start' => '15504959',
'end' => '15510989',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PSIP1-008'
),
'ENST00000487363' => array(
'start' => '15485903',
'end' => '15510289',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PSIP1-009'
),
'ENST00000488797' => array(
'start' => '15491952',
'end' => '15510991',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PSIP1-001'
),
'ENST00000495873' => array(
'start' => '15472081',
'end' => '15474201',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PSIP1-002'
),
'ENST00000380701' => array(
'start' => '15553086',
'end' => '15974039',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC171-001'
),
'ENST00000432954' => array(
'start' => '15777768',
'end' => '15876083',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC171-008'
),
'ENST00000449575' => array(
'start' => '15744505',
'end' => '15886805',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC171-003'
),
'ENST00000470191' => array(
'start' => '15845639',
'end' => '15971897',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CCDC171-005'
),
'ENST00000472806' => array(
'start' => '15887795',
'end' => '15920334',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CCDC171-007'
),
'ENST00000474193' => array(
'start' => '15553291',
'end' => '15564024',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CCDC171-002'
),
'ENST00000478913' => array(
'start' => '16042798',
'end' => '16061320',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CCDC171-009'
),
'ENST00000486641' => array(
'start' => '15874541',
'end' => '16061663',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CCDC171-004'
),
'ENST00000498725' => array(
'start' => '15850226',
'end' => '15971735',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CCDC171-006'
),
'ENST00000535968' => array(
'start' => '15552897',
'end' => '15660146',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC171-201'
),
'ENST00000384630' => array(
'start' => '15776181',
'end' => '15776286',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-14P-201'
),
'ENST00000384702' => array(
'start' => '15544188',
'end' => '15544294',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-246P-201'
),
'ENST00000432137' => array(
'start' => '15527133',
'end' => '15527683',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'FTH1P12-001'
),
'ENST00000456802' => array(
'start' => '15588355',
'end' => '15588615',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'HMGN2P16-001'
),
'ENST00000462271' => array(
'start' => '15525782',
'end' => '15526081',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL98P-201'
),
'ENST00000621695' => array(
'start' => '15524576',
'end' => '15524707',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-518K17.4-001'
),
'ENSMUST00000030206' => array(
'start' => '83417724',
'end' => '83453340',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Snapc3-006'
),
'ENSMUST00000071544' => array(
'start' => '83417731',
'end' => '83442086',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Snapc3-003'
),
'ENSMUST00000123262' => array(
'start' => '83417724',
'end' => '83461846',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Snapc3-005'
),
'ENSMUST00000124856' => array(
'start' => '83417744',
'end' => '83467219',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Snapc3-004'
),
'ENSMUST00000130676' => array(
'start' => '83463976',
'end' => '83467211',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Snapc3-007'
),
'ENSMUST00000137512' => array(
'start' => '83417744',
'end' => '83454033',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Snapc3-002'
),
'ENSMUST00000143533' => array(
'start' => '83417749',
'end' => '83467676',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Snapc3-001'
),
'ENSMUST00000159518' => array(
'start' => '83453806',
'end' => '83467166',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Snapc3-009'
),
'ENSMUST00000160742' => array(
'start' => '83453954',
'end' => '83466127',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Snapc3-008'
),
'ENSMUST00000030207' => array(
'start' => '83455680',
'end' => '83486459',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Psip1-001'
),
'ENSMUST00000107214' => array(
'start' => '83461871',
'end' => '83486453',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Psip1-003'
),
'ENSMUST00000107215' => array(
'start' => '83461871',
'end' => '83486458',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Psip1-002'
),
'ENSMUST00000126706' => array(
'start' => '83461871',
'end' => '83464964',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Psip1-004'
),
'ENSMUST00000130626' => array(
'start' => '83476298',
'end' => '83486178',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Psip1-006'
),
'ENSMUST00000144349' => array(
'start' => '83462830',
'end' => '83465043',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Psip1-005'
),
'ENSMUST00000152382' => array(
'start' => '83458075',
'end' => '83460292',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Psip1-008'
),
'ENSMUST00000053414' => array(
'start' => '83525545',
'end' => '83864670',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ccdc171-001'
),
'ENSMUST00000107202' => array(
'start' => '83549660',
'end' => '83558841',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ccdc171-003'
),
'ENSMUST00000125077' => array(
'start' => '83525639',
'end' => '83864585',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Ccdc171-006'
),
'ENSMUST00000126429' => array(
'start' => '83525614',
'end' => '83555378',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ccdc171-002'
),
'ENSMUST00000183729' => array(
'start' => '83695955',
'end' => '83798676',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ccdc171-005'
),
'ENSMUST00000082672' => array(
'start' => '83527628',
'end' => '83527768',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm25899-201'
),
'ENSMUST00000084445' => array(
'start' => '83505185',
'end' => '83505538',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm10154-001'
),
'ENSMUST00000118595' => array(
'start' => '83701084',
'end' => '83702036',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Cbx3-ps3-001'
),
'ENSMUST00000121795' => array(
'start' => '83500499',
'end' => '83500761',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm11414-001'
),
'ENSMUST00000182894' => array(
'start' => '83743677',
'end' => '83744157',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'Gm26968-001'
),
'ENSMUST00000182160' => array(
'start' => '83597303',
'end' => '83597765',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm27046-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_00051U_0002' => array(
'genes_in_region' => array(
'ENSG00000164985' => array(
[maximum depth reached]
),
'ENSG00000164989' => array(
[maximum depth reached]
),
'ENSG00000213362' => array(
[maximum depth reached]
),
'ENSG00000231376' => array(
[maximum depth reached]
),
'ENSG00000240613' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Heart',
(int) 4 => 'Liver',
(int) 5 => 'Lung',
(int) 6 => 'Muscle',
(int) 7 => 'Ovary',
(int) 8 => 'Placenta',
(int) 9 => 'Brain',
(int) 10 => 'Breast',
(int) 11 => 'Testis',
(int) 12 => 'Breast',
(int) 13 => 'Heart',
(int) 14 => 'Kidney',
(int) 15 => 'Liver',
(int) 16 => 'Lung',
(int) 17 => 'Ovary',
(int) 18 => 'Placenta',
(int) 19 => 'Muscle',
(int) 20 => 'Bladder',
(int) 21 => 'Brain',
(int) 22 => 'Lung',
(int) 23 => 'Adipose',
(int) 24 => 'Brain',
(int) 25 => 'Breast',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Adipose',
(int) 35 => 'Adrenal',
(int) 36 => 'Bladder',
(int) 37 => 'Brain',
(int) 38 => 'Colon',
(int) 39 => 'Liver',
(int) 40 => 'Lung',
(int) 41 => 'Muscle',
(int) 42 => 'Ovary',
(int) 43 => 'Placenta',
(int) 44 => 'Testis',
(int) 45 => 'Brain',
(int) 46 => 'Testis',
(int) 47 => 'Brain',
(int) 48 => 'Adipose',
(int) 49 => 'Adrenal',
(int) 50 => 'Brain',
(int) 51 => 'Breast',
(int) 52 => 'Colon',
(int) 53 => 'Heart',
(int) 54 => 'Kidney',
(int) 55 => 'Liver',
(int) 56 => 'Lung',
(int) 57 => 'Muscle',
(int) 58 => 'Ovary',
(int) 59 => 'Placenta',
(int) 60 => 'Testis',
(int) 61 => 'Adrenal',
(int) 62 => 'Adrenal',
(int) 63 => 'Brain',
(int) 64 => 'Liver',
(int) 65 => 'Placenta',
(int) 66 => 'Lung',
(int) 67 => 'Ovary',
(int) 68 => 'Placenta',
(int) 69 => 'Testis',
(int) 70 => 'Colon',
(int) 71 => 'Heart',
(int) 72 => 'Liver',
(int) 73 => 'Lung',
(int) 74 => 'Muscle',
(int) 75 => 'Ovary',
(int) 76 => 'Adipose',
(int) 77 => 'Adrenal',
(int) 78 => 'Brain',
(int) 79 => 'Breast',
(int) 80 => 'Colon',
(int) 81 => 'Heart',
(int) 82 => 'Kidney',
(int) 83 => 'Liver',
(int) 84 => 'Lung',
(int) 85 => 'Muscle',
(int) 86 => 'Ovary',
(int) 87 => 'Placenta',
(int) 88 => 'Testis',
(int) 89 => 'Ovary',
(int) 90 => 'Adrenal',
(int) 91 => 'Testis'
)
),
'CIL_00051U_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000028483' => array(
[maximum depth reached]
),
'ENSMUSG00000028484' => array(
[maximum depth reached]
),
'ENSMUSG00000052407' => array(
[maximum depth reached]
),
'ENSMUSG00000066116' => array(
[maximum depth reached]
),
'ENSMUSG00000080793' => array(
[maximum depth reached]
),
'ENSMUSG00000082416' => array(
[maximum depth reached]
),
'ENSMUSG00000097942' => array(
[maximum depth reached]
),
'ENSMUSG00000098217' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Breast',
(int) 2 => 'Heart',
(int) 3 => 'Kidney',
(int) 4 => 'Liver',
(int) 5 => 'Lung',
(int) 6 => 'Muscle',
(int) 7 => 'Adrenal',
(int) 8 => 'Breast',
(int) 9 => 'Colon',
(int) 10 => 'Breast',
(int) 11 => 'Kidney',
(int) 12 => 'Lung',
(int) 13 => 'Adipose',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Lung',
(int) 21 => 'Muscle',
(int) 22 => 'Ovary',
(int) 23 => 'Placenta',
(int) 24 => 'Testis',
(int) 25 => 'Adipose',
(int) 26 => 'Adrenal',
(int) 27 => 'Brain',
(int) 28 => 'Breast',
(int) 29 => 'Colon',
(int) 30 => 'Heart',
(int) 31 => 'Liver',
(int) 32 => 'Lung',
(int) 33 => 'Muscle',
(int) 34 => 'Ovary',
(int) 35 => 'Placenta',
(int) 36 => 'Adipose',
(int) 37 => 'Adrenal',
(int) 38 => 'Brain',
(int) 39 => 'Breast',
(int) 40 => 'Colon',
(int) 41 => 'Kidney',
(int) 42 => 'Liver',
(int) 43 => 'Lung',
(int) 44 => 'Ovary',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Adipose',
(int) 48 => 'Breast',
(int) 49 => 'Kidney',
(int) 50 => 'Lung',
(int) 51 => 'Ovary',
(int) 52 => 'Testis',
(int) 53 => 'Ovary',
(int) 54 => 'Placenta',
(int) 55 => 'Testis',
(int) 56 => 'Adrenal',
(int) 57 => 'Brain',
(int) 58 => 'Breast',
(int) 59 => 'Colon',
(int) 60 => 'Heart',
(int) 61 => 'Kidney',
(int) 62 => 'Liver',
(int) 63 => 'Lung',
(int) 64 => 'Muscle',
(int) 65 => 'Ovary',
(int) 66 => 'Placenta',
(int) 67 => 'Testis',
(int) 68 => 'Brain',
(int) 69 => 'Breast',
(int) 70 => 'Colon',
(int) 71 => 'Ovary',
(int) 72 => 'Adipose',
(int) 73 => 'Bladder',
(int) 74 => 'Brain',
(int) 75 => 'Breast',
(int) 76 => 'Heart',
(int) 77 => 'Kidney',
(int) 78 => 'Liver',
(int) 79 => 'Muscle',
(int) 80 => 'Ovary',
(int) 81 => 'Placenta',
(int) 82 => 'Testis',
(int) 83 => 'Adrenal',
(int) 84 => 'Colon',
(int) 85 => 'Muscle',
(int) 86 => 'Adrenal',
(int) 87 => 'Brain',
(int) 88 => 'Heart',
(int) 89 => 'Lung',
(int) 90 => 'Muscle',
(int) 91 => 'Ovary',
(int) 92 => 'Brain',
(int) 93 => 'Liver',
(int) 94 => 'Muscle',
(int) 95 => 'Ovary',
(int) 96 => 'Placenta',
(int) 97 => 'Bladder',
(int) 98 => 'Brain',
(int) 99 => 'Liver',
(int) 100 => 'Muscle',
(int) 101 => 'Ovary',
(int) 102 => 'Placenta',
(int) 103 => 'Testis',
(int) 104 => 'Brain',
(int) 105 => 'Placenta',
(int) 106 => 'Testis',
(int) 107 => 'Brain',
(int) 108 => 'Liver',
(int) 109 => 'Placenta',
(int) 110 => 'Colon',
(int) 111 => 'Liver',
(int) 112 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_00051U_0001',
'tax_id' => '7955',
'chromosome' => '23',
'seq_start' => '44907805',
'seq_end' => '44966494',
'region_length' => '58689',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000077405-ENSDARG00000027381'
)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_00051U_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00051U_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSDARG00000027381' => 'coiled-coil domain containing 171',
'ENSDARG00000077405' => 'PC4 and SFRS1 interacting protein 1',
'ENSG00000164975' => 'small nuclear RNA activating complex, polypeptide 3, 50kDa',
'ENSG00000164985' => 'PC4 and SFRS1 interacting protein 1',
'ENSG00000164989' => 'coiled-coil domain containing 171',
'ENSG00000207360' => 'RNA, U6 small nuclear 14, pseudogene',
'ENSG00000207433' => 'RNA, U6 small nuclear 246, pseudogene',
'ENSG00000213362' => 'ferritin, heavy polypeptide 1 pseudogene 12',
'ENSG00000231376' => 'high mobility group nucleosomal binding domain 2 pseudogene 16',
'ENSG00000240613' => 'RNA, 7SL, cytoplasmic 98, pseudogene',
'ENSG00000278754' => null,
'ENSMUSG00000028483' => 'small nuclear RNA activating complex, polypeptide 3',
'ENSMUSG00000028484' => 'PC4 and SFRS1 interacting protein 1',
'ENSMUSG00000052407' => 'coiled-coil domain containing 171',
'ENSMUSG00000064606' => 'predicted gene, 25899',
'ENSMUSG00000066116' => 'predicted gene 10154',
'ENSMUSG00000080793' => 'chromobox 3, pseudogene 3',
'ENSMUSG00000082416' => 'predicted gene 11414',
'ENSMUSG00000097942' => 'predicted gene, 26968',
'ENSMUSG00000098217' => 'predicted gene, 27046'
),
'gene_name_arr' => array(
'ENSDARG00000027381' => 'CCDC171',
'ENSDARG00000077405' => 'si:ch211-116m6.3',
'ENSG00000164975' => 'SNAPC3',
'ENSG00000164985' => 'PSIP1',
'ENSG00000164989' => 'CCDC171',
'ENSG00000207360' => 'RNU6-14P',
'ENSG00000207433' => 'RNU6-246P',
'ENSG00000213362' => 'FTH1P12',
'ENSG00000231376' => 'HMGN2P16',
'ENSG00000240613' => 'RN7SL98P',
'ENSG00000278754' => 'RP11-518K17.4',
'ENSMUSG00000028483' => 'Snapc3',
'ENSMUSG00000028484' => 'Psip1',
'ENSMUSG00000052407' => 'Ccdc171',
'ENSMUSG00000064606' => 'Gm25899',
'ENSMUSG00000066116' => 'Gm10154',
'ENSMUSG00000080793' => 'Cbx3-ps3',
'ENSMUSG00000082416' => 'Gm11414',
'ENSMUSG00000097942' => 'Gm26968',
'ENSMUSG00000098217' => 'Gm27046'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 23 => 'Bladder',
(int) 28 => 'Brain',
(int) 51 => 'Breast',
(int) 67 => 'Colon',
(int) 78 => 'Heart',
(int) 93 => 'Kidney',
(int) 107 => 'Liver',
(int) 126 => 'Lung',
(int) 143 => 'Muscle',
(int) 159 => 'Ovary',
(int) 179 => 'Placenta',
(int) 197 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 67,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENSDART00000036644' => array(
'start' => '44938544',
'end' => '44949496',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC171-201'
),
'ENSDART00000102447' => array(
'start' => '44938544',
'end' => '44951273',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC171-202'
),
'ENSDART00000148726' => array(
'start' => '44934781',
'end' => '44966494',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC171-001'
),
'ENSDART00000102441' => array(
'start' => '44923180',
'end' => '44934393',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:ch211-116m6.3-201'
),
'ENSDART00000111126' => array(
'start' => '44924101',
'end' => '44934092',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:ch211-116m6.3-202'
),
'ENSDART00000149410' => array(
'start' => '44907805',
'end' => '44934536',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:ch211-116m6.3-001'
),
'ENST00000380799' => array(
'start' => '15447112',
'end' => '15453577',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNAPC3-005'
),
'ENST00000380821' => array(
'start' => '15422704',
'end' => '15464134',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNAPC3-002'
),
'ENST00000421710' => array(
'start' => '15422879',
'end' => '15453104',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNAPC3-006'
),
'ENST00000461041' => array(
'start' => '15423142',
'end' => '15433824',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SNAPC3-004'
),
'ENST00000467062' => array(
'start' => '15422734',
'end' => '15465953',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SNAPC3-001'
),
'ENST00000490969' => array(
'start' => '15422869',
'end' => '15462460',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SNAPC3-003'
),
'ENST00000610884' => array(
'start' => '15422734',
'end' => '15465832',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNAPC3-201'
),
'ENST00000380715' => array(
'start' => '15470636',
'end' => '15510991',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSIP1-006'
),
'ENST00000380716' => array(
'start' => '15470636',
'end' => '15510994',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSIP1-007'
),
'ENST00000380733' => array(
'start' => '15464066',
'end' => '15511019',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSIP1-003'
),
'ENST00000380738' => array(
'start' => '15464066',
'end' => '15510995',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSIP1-004'
),
'ENST00000397519' => array(
'start' => '15470646',
'end' => '15510289',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSIP1-201'
),
'ENST00000463712' => array(
'start' => '15489270',
'end' => '15510946',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PSIP1-010'
),
'ENST00000481862' => array(
'start' => '15470990',
'end' => '15472750',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSIP1-005'
),
'ENST00000484265' => array(
'start' => '15504959',
'end' => '15510989',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PSIP1-008'
),
'ENST00000487363' => array(
'start' => '15485903',
'end' => '15510289',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PSIP1-009'
),
'ENST00000488797' => array(
'start' => '15491952',
'end' => '15510991',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PSIP1-001'
),
'ENST00000495873' => array(
'start' => '15472081',
'end' => '15474201',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PSIP1-002'
),
'ENST00000380701' => array(
'start' => '15553086',
'end' => '15974039',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC171-001'
),
'ENST00000432954' => array(
'start' => '15777768',
'end' => '15876083',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC171-008'
),
'ENST00000449575' => array(
'start' => '15744505',
'end' => '15886805',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC171-003'
),
'ENST00000470191' => array(
'start' => '15845639',
'end' => '15971897',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CCDC171-005'
),
'ENST00000472806' => array(
'start' => '15887795',
'end' => '15920334',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CCDC171-007'
),
'ENST00000474193' => array(
'start' => '15553291',
'end' => '15564024',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CCDC171-002'
),
'ENST00000478913' => array(
'start' => '16042798',
'end' => '16061320',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CCDC171-009'
),
'ENST00000486641' => array(
'start' => '15874541',
'end' => '16061663',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CCDC171-004'
),
'ENST00000498725' => array(
'start' => '15850226',
'end' => '15971735',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CCDC171-006'
),
'ENST00000535968' => array(
'start' => '15552897',
'end' => '15660146',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC171-201'
),
'ENST00000384630' => array(
'start' => '15776181',
'end' => '15776286',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-14P-201'
),
'ENST00000384702' => array(
'start' => '15544188',
'end' => '15544294',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-246P-201'
),
'ENST00000432137' => array(
'start' => '15527133',
'end' => '15527683',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'FTH1P12-001'
),
'ENST00000456802' => array(
'start' => '15588355',
'end' => '15588615',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'HMGN2P16-001'
),
'ENST00000462271' => array(
'start' => '15525782',
'end' => '15526081',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL98P-201'
),
'ENST00000621695' => array(
'start' => '15524576',
'end' => '15524707',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-518K17.4-001'
),
'ENSMUST00000030206' => array(
'start' => '83417724',
'end' => '83453340',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Snapc3-006'
),
'ENSMUST00000071544' => array(
'start' => '83417731',
'end' => '83442086',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Snapc3-003'
),
'ENSMUST00000123262' => array(
'start' => '83417724',
'end' => '83461846',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Snapc3-005'
),
'ENSMUST00000124856' => array(
'start' => '83417744',
'end' => '83467219',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Snapc3-004'
),
'ENSMUST00000130676' => array(
'start' => '83463976',
'end' => '83467211',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Snapc3-007'
),
'ENSMUST00000137512' => array(
'start' => '83417744',
'end' => '83454033',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Snapc3-002'
),
'ENSMUST00000143533' => array(
'start' => '83417749',
'end' => '83467676',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Snapc3-001'
),
'ENSMUST00000159518' => array(
'start' => '83453806',
'end' => '83467166',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Snapc3-009'
),
'ENSMUST00000160742' => array(
'start' => '83453954',
'end' => '83466127',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Snapc3-008'
),
'ENSMUST00000030207' => array(
'start' => '83455680',
'end' => '83486459',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Psip1-001'
),
'ENSMUST00000107214' => array(
'start' => '83461871',
'end' => '83486453',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Psip1-003'
),
'ENSMUST00000107215' => array(
'start' => '83461871',
'end' => '83486458',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Psip1-002'
),
'ENSMUST00000126706' => array(
'start' => '83461871',
'end' => '83464964',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Psip1-004'
),
'ENSMUST00000130626' => array(
'start' => '83476298',
'end' => '83486178',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Psip1-006'
),
'ENSMUST00000144349' => array(
'start' => '83462830',
'end' => '83465043',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Psip1-005'
),
'ENSMUST00000152382' => array(
'start' => '83458075',
'end' => '83460292',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Psip1-008'
),
'ENSMUST00000053414' => array(
'start' => '83525545',
'end' => '83864670',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ccdc171-001'
),
'ENSMUST00000107202' => array(
'start' => '83549660',
'end' => '83558841',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ccdc171-003'
),
'ENSMUST00000125077' => array(
'start' => '83525639',
'end' => '83864585',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Ccdc171-006'
),
'ENSMUST00000126429' => array(
'start' => '83525614',
'end' => '83555378',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ccdc171-002'
),
'ENSMUST00000183729' => array(
'start' => '83695955',
'end' => '83798676',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ccdc171-005'
),
'ENSMUST00000082672' => array(
'start' => '83527628',
'end' => '83527768',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm25899-201'
),
'ENSMUST00000084445' => array(
'start' => '83505185',
'end' => '83505538',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm10154-001'
),
'ENSMUST00000118595' => array(
'start' => '83701084',
'end' => '83702036',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Cbx3-ps3-001'
),
'ENSMUST00000121795' => array(
'start' => '83500499',
'end' => '83500761',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm11414-001'
),
'ENSMUST00000182894' => array(
'start' => '83743677',
'end' => '83744157',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'Gm26968-001'
),
'ENSMUST00000182160' => array(
'start' => '83597303',
'end' => '83597765',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm27046-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_00051U_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00051U_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_00051U_0002' => array(
'genes_in_region' => array(
'ENSG00000164985' => array(
[maximum depth reached]
),
'ENSG00000164989' => array(
[maximum depth reached]
),
'ENSG00000213362' => array(
[maximum depth reached]
),
'ENSG00000231376' => array(
[maximum depth reached]
),
'ENSG00000240613' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Heart',
(int) 4 => 'Liver',
(int) 5 => 'Lung',
(int) 6 => 'Muscle',
(int) 7 => 'Ovary',
(int) 8 => 'Placenta',
(int) 9 => 'Brain',
(int) 10 => 'Breast',
(int) 11 => 'Testis',
(int) 12 => 'Breast',
(int) 13 => 'Heart',
(int) 14 => 'Kidney',
(int) 15 => 'Liver',
(int) 16 => 'Lung',
(int) 17 => 'Ovary',
(int) 18 => 'Placenta',
(int) 19 => 'Muscle',
(int) 20 => 'Bladder',
(int) 21 => 'Brain',
(int) 22 => 'Lung',
(int) 23 => 'Adipose',
(int) 24 => 'Brain',
(int) 25 => 'Breast',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Adipose',
(int) 35 => 'Adrenal',
(int) 36 => 'Bladder',
(int) 37 => 'Brain',
(int) 38 => 'Colon',
(int) 39 => 'Liver',
(int) 40 => 'Lung',
(int) 41 => 'Muscle',
(int) 42 => 'Ovary',
(int) 43 => 'Placenta',
(int) 44 => 'Testis',
(int) 45 => 'Brain',
(int) 46 => 'Testis',
(int) 47 => 'Brain',
(int) 48 => 'Adipose',
(int) 49 => 'Adrenal',
(int) 50 => 'Brain',
(int) 51 => 'Breast',
(int) 52 => 'Colon',
(int) 53 => 'Heart',
(int) 54 => 'Kidney',
(int) 55 => 'Liver',
(int) 56 => 'Lung',
(int) 57 => 'Muscle',
(int) 58 => 'Ovary',
(int) 59 => 'Placenta',
(int) 60 => 'Testis',
(int) 61 => 'Adrenal',
(int) 62 => 'Adrenal',
(int) 63 => 'Brain',
(int) 64 => 'Liver',
(int) 65 => 'Placenta',
(int) 66 => 'Lung',
(int) 67 => 'Ovary',
(int) 68 => 'Placenta',
(int) 69 => 'Testis',
(int) 70 => 'Colon',
(int) 71 => 'Heart',
(int) 72 => 'Liver',
(int) 73 => 'Lung',
(int) 74 => 'Muscle',
(int) 75 => 'Ovary',
(int) 76 => 'Adipose',
(int) 77 => 'Adrenal',
(int) 78 => 'Brain',
(int) 79 => 'Breast',
(int) 80 => 'Colon',
(int) 81 => 'Heart',
(int) 82 => 'Kidney',
(int) 83 => 'Liver',
(int) 84 => 'Lung',
(int) 85 => 'Muscle',
(int) 86 => 'Ovary',
(int) 87 => 'Placenta',
(int) 88 => 'Testis',
(int) 89 => 'Ovary',
(int) 90 => 'Adrenal',
(int) 91 => 'Testis'
)
),
'CIL_00051U_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000028483' => array(
[maximum depth reached]
),
'ENSMUSG00000028484' => array(
[maximum depth reached]
),
'ENSMUSG00000052407' => array(
[maximum depth reached]
),
'ENSMUSG00000066116' => array(
[maximum depth reached]
),
'ENSMUSG00000080793' => array(
[maximum depth reached]
),
'ENSMUSG00000082416' => array(
[maximum depth reached]
),
'ENSMUSG00000097942' => array(
[maximum depth reached]
),
'ENSMUSG00000098217' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Breast',
(int) 2 => 'Heart',
(int) 3 => 'Kidney',
(int) 4 => 'Liver',
(int) 5 => 'Lung',
(int) 6 => 'Muscle',
(int) 7 => 'Adrenal',
(int) 8 => 'Breast',
(int) 9 => 'Colon',
(int) 10 => 'Breast',
(int) 11 => 'Kidney',
(int) 12 => 'Lung',
(int) 13 => 'Adipose',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Lung',
(int) 21 => 'Muscle',
(int) 22 => 'Ovary',
(int) 23 => 'Placenta',
(int) 24 => 'Testis',
(int) 25 => 'Adipose',
(int) 26 => 'Adrenal',
(int) 27 => 'Brain',
(int) 28 => 'Breast',
(int) 29 => 'Colon',
(int) 30 => 'Heart',
(int) 31 => 'Liver',
(int) 32 => 'Lung',
(int) 33 => 'Muscle',
(int) 34 => 'Ovary',
(int) 35 => 'Placenta',
(int) 36 => 'Adipose',
(int) 37 => 'Adrenal',
(int) 38 => 'Brain',
(int) 39 => 'Breast',
(int) 40 => 'Colon',
(int) 41 => 'Kidney',
(int) 42 => 'Liver',
(int) 43 => 'Lung',
(int) 44 => 'Ovary',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Adipose',
(int) 48 => 'Breast',
(int) 49 => 'Kidney',
(int) 50 => 'Lung',
(int) 51 => 'Ovary',
(int) 52 => 'Testis',
(int) 53 => 'Ovary',
(int) 54 => 'Placenta',
(int) 55 => 'Testis',
(int) 56 => 'Adrenal',
(int) 57 => 'Brain',
(int) 58 => 'Breast',
(int) 59 => 'Colon',
(int) 60 => 'Heart',
(int) 61 => 'Kidney',
(int) 62 => 'Liver',
(int) 63 => 'Lung',
(int) 64 => 'Muscle',
(int) 65 => 'Ovary',
(int) 66 => 'Placenta',
(int) 67 => 'Testis',
(int) 68 => 'Brain',
(int) 69 => 'Breast',
(int) 70 => 'Colon',
(int) 71 => 'Ovary',
(int) 72 => 'Adipose',
(int) 73 => 'Bladder',
(int) 74 => 'Brain',
(int) 75 => 'Breast',
(int) 76 => 'Heart',
(int) 77 => 'Kidney',
(int) 78 => 'Liver',
(int) 79 => 'Muscle',
(int) 80 => 'Ovary',
(int) 81 => 'Placenta',
(int) 82 => 'Testis',
(int) 83 => 'Adrenal',
(int) 84 => 'Colon',
(int) 85 => 'Muscle',
(int) 86 => 'Adrenal',
(int) 87 => 'Brain',
(int) 88 => 'Heart',
(int) 89 => 'Lung',
(int) 90 => 'Muscle',
(int) 91 => 'Ovary',
(int) 92 => 'Brain',
(int) 93 => 'Liver',
(int) 94 => 'Muscle',
(int) 95 => 'Ovary',
(int) 96 => 'Placenta',
(int) 97 => 'Bladder',
(int) 98 => 'Brain',
(int) 99 => 'Liver',
(int) 100 => 'Muscle',
(int) 101 => 'Ovary',
(int) 102 => 'Placenta',
(int) 103 => 'Testis',
(int) 104 => 'Brain',
(int) 105 => 'Placenta',
(int) 106 => 'Testis',
(int) 107 => 'Brain',
(int) 108 => 'Liver',
(int) 109 => 'Placenta',
(int) 110 => 'Colon',
(int) 111 => 'Liver',
(int) 112 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSDARG00000027381' => 'coiled-coil domain containing 171',
'ENSDARG00000077405' => 'PC4 and SFRS1 interacting protein 1',
'ENSG00000164975' => 'small nuclear RNA activating complex, polypeptide 3, 50kDa',
'ENSG00000164985' => 'PC4 and SFRS1 interacting protein 1',
'ENSG00000164989' => 'coiled-coil domain containing 171',
'ENSG00000207360' => 'RNA, U6 small nuclear 14, pseudogene',
'ENSG00000207433' => 'RNA, U6 small nuclear 246, pseudogene',
'ENSG00000213362' => 'ferritin, heavy polypeptide 1 pseudogene 12',
'ENSG00000231376' => 'high mobility group nucleosomal binding domain 2 pseudogene 16',
'ENSG00000240613' => 'RNA, 7SL, cytoplasmic 98, pseudogene',
'ENSG00000278754' => null,
'ENSMUSG00000028483' => 'small nuclear RNA activating complex, polypeptide 3',
'ENSMUSG00000028484' => 'PC4 and SFRS1 interacting protein 1',
'ENSMUSG00000052407' => 'coiled-coil domain containing 171',
'ENSMUSG00000064606' => 'predicted gene, 25899',
'ENSMUSG00000066116' => 'predicted gene 10154',
'ENSMUSG00000080793' => 'chromobox 3, pseudogene 3',
'ENSMUSG00000082416' => 'predicted gene 11414',
'ENSMUSG00000097942' => 'predicted gene, 26968',
'ENSMUSG00000098217' => 'predicted gene, 27046'
)
$gene_name_arr = array(
'ENSDARG00000027381' => 'CCDC171',
'ENSDARG00000077405' => 'si:ch211-116m6.3',
'ENSG00000164975' => 'SNAPC3',
'ENSG00000164985' => 'PSIP1',
'ENSG00000164989' => 'CCDC171',
'ENSG00000207360' => 'RNU6-14P',
'ENSG00000207433' => 'RNU6-246P',
'ENSG00000213362' => 'FTH1P12',
'ENSG00000231376' => 'HMGN2P16',
'ENSG00000240613' => 'RN7SL98P',
'ENSG00000278754' => 'RP11-518K17.4',
'ENSMUSG00000028483' => 'Snapc3',
'ENSMUSG00000028484' => 'Psip1',
'ENSMUSG00000052407' => 'Ccdc171',
'ENSMUSG00000064606' => 'Gm25899',
'ENSMUSG00000066116' => 'Gm10154',
'ENSMUSG00000080793' => 'Cbx3-ps3',
'ENSMUSG00000082416' => 'Gm11414',
'ENSMUSG00000097942' => 'Gm26968',
'ENSMUSG00000098217' => 'Gm27046'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00051U_0001',
'tax_id' => '7955',
'chromosome' => '23',
'seq_start' => '44907805',
'seq_end' => '44966494',
'region_length' => '58689',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000077405-ENSDARG00000027381'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00051U_0002',
'tax_id' => '9606',
'chromosome' => '9',
'seq_start' => '15464066',
'seq_end' => '16061663',
'region_length' => '597597',
'region_type' => 'CGP',
'el_id' => 'ENSG00000164985-ENSG00000164989'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00051U_0003',
'tax_id' => '10090',
'chromosome' => '4',
'seq_start' => '83455680',
'seq_end' => '83864670',
'region_length' => '408990',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000028484-ENSMUSG00000052407'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 23 => 'Bladder',
(int) 28 => 'Brain',
(int) 51 => 'Breast',
(int) 67 => 'Colon',
(int) 78 => 'Heart',
(int) 93 => 'Kidney',
(int) 107 => 'Liver',
(int) 126 => 'Lung',
(int) 143 => 'Muscle',
(int) 159 => 'Ovary',
(int) 179 => 'Placenta',
(int) 197 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 67
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENSDART00000036644' => array(
'start' => '44938544',
'end' => '44949496',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC171-201'
),
'ENSDART00000102447' => array(
'start' => '44938544',
'end' => '44951273',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC171-202'
),
'ENSDART00000148726' => array(
'start' => '44934781',
'end' => '44966494',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC171-001'
),
'ENSDART00000102441' => array(
'start' => '44923180',
'end' => '44934393',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:ch211-116m6.3-201'
),
'ENSDART00000111126' => array(
'start' => '44924101',
'end' => '44934092',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:ch211-116m6.3-202'
),
'ENSDART00000149410' => array(
'start' => '44907805',
'end' => '44934536',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:ch211-116m6.3-001'
),
'ENST00000380799' => array(
'start' => '15447112',
'end' => '15453577',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNAPC3-005'
),
'ENST00000380821' => array(
'start' => '15422704',
'end' => '15464134',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNAPC3-002'
),
'ENST00000421710' => array(
'start' => '15422879',
'end' => '15453104',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNAPC3-006'
),
'ENST00000461041' => array(
'start' => '15423142',
'end' => '15433824',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SNAPC3-004'
),
'ENST00000467062' => array(
'start' => '15422734',
'end' => '15465953',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SNAPC3-001'
),
'ENST00000490969' => array(
'start' => '15422869',
'end' => '15462460',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SNAPC3-003'
),
'ENST00000610884' => array(
'start' => '15422734',
'end' => '15465832',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNAPC3-201'
),
'ENST00000380715' => array(
'start' => '15470636',
'end' => '15510991',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSIP1-006'
),
'ENST00000380716' => array(
'start' => '15470636',
'end' => '15510994',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSIP1-007'
),
'ENST00000380733' => array(
'start' => '15464066',
'end' => '15511019',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSIP1-003'
),
'ENST00000380738' => array(
'start' => '15464066',
'end' => '15510995',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSIP1-004'
),
'ENST00000397519' => array(
'start' => '15470646',
'end' => '15510289',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSIP1-201'
),
'ENST00000463712' => array(
'start' => '15489270',
'end' => '15510946',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PSIP1-010'
),
'ENST00000481862' => array(
'start' => '15470990',
'end' => '15472750',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSIP1-005'
),
'ENST00000484265' => array(
'start' => '15504959',
'end' => '15510989',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PSIP1-008'
),
'ENST00000487363' => array(
'start' => '15485903',
'end' => '15510289',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PSIP1-009'
),
'ENST00000488797' => array(
'start' => '15491952',
'end' => '15510991',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PSIP1-001'
),
'ENST00000495873' => array(
'start' => '15472081',
'end' => '15474201',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PSIP1-002'
),
'ENST00000380701' => array(
'start' => '15553086',
'end' => '15974039',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC171-001'
),
'ENST00000432954' => array(
'start' => '15777768',
'end' => '15876083',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC171-008'
),
'ENST00000449575' => array(
'start' => '15744505',
'end' => '15886805',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC171-003'
),
'ENST00000470191' => array(
'start' => '15845639',
'end' => '15971897',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CCDC171-005'
),
'ENST00000472806' => array(
'start' => '15887795',
'end' => '15920334',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CCDC171-007'
),
'ENST00000474193' => array(
'start' => '15553291',
'end' => '15564024',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CCDC171-002'
),
'ENST00000478913' => array(
'start' => '16042798',
'end' => '16061320',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CCDC171-009'
),
'ENST00000486641' => array(
'start' => '15874541',
'end' => '16061663',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CCDC171-004'
),
'ENST00000498725' => array(
'start' => '15850226',
'end' => '15971735',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CCDC171-006'
),
'ENST00000535968' => array(
'start' => '15552897',
'end' => '15660146',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CCDC171-201'
),
'ENST00000384630' => array(
'start' => '15776181',
'end' => '15776286',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-14P-201'
),
'ENST00000384702' => array(
'start' => '15544188',
'end' => '15544294',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-246P-201'
),
'ENST00000432137' => array(
'start' => '15527133',
'end' => '15527683',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'FTH1P12-001'
),
'ENST00000456802' => array(
'start' => '15588355',
'end' => '15588615',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'HMGN2P16-001'
),
'ENST00000462271' => array(
'start' => '15525782',
'end' => '15526081',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL98P-201'
),
'ENST00000621695' => array(
'start' => '15524576',
'end' => '15524707',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-518K17.4-001'
),
'ENSMUST00000030206' => array(
'start' => '83417724',
'end' => '83453340',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Snapc3-006'
),
'ENSMUST00000071544' => array(
'start' => '83417731',
'end' => '83442086',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Snapc3-003'
),
'ENSMUST00000123262' => array(
'start' => '83417724',
'end' => '83461846',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Snapc3-005'
),
'ENSMUST00000124856' => array(
'start' => '83417744',
'end' => '83467219',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Snapc3-004'
),
'ENSMUST00000130676' => array(
'start' => '83463976',
'end' => '83467211',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Snapc3-007'
),
'ENSMUST00000137512' => array(
'start' => '83417744',
'end' => '83454033',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Snapc3-002'
),
'ENSMUST00000143533' => array(
'start' => '83417749',
'end' => '83467676',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Snapc3-001'
),
'ENSMUST00000159518' => array(
'start' => '83453806',
'end' => '83467166',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Snapc3-009'
),
'ENSMUST00000160742' => array(
'start' => '83453954',
'end' => '83466127',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Snapc3-008'
),
'ENSMUST00000030207' => array(
'start' => '83455680',
'end' => '83486459',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Psip1-001'
),
'ENSMUST00000107214' => array(
'start' => '83461871',
'end' => '83486453',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Psip1-003'
),
'ENSMUST00000107215' => array(
'start' => '83461871',
'end' => '83486458',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Psip1-002'
),
'ENSMUST00000126706' => array(
'start' => '83461871',
'end' => '83464964',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Psip1-004'
),
'ENSMUST00000130626' => array(
'start' => '83476298',
'end' => '83486178',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Psip1-006'
),
'ENSMUST00000144349' => array(
'start' => '83462830',
'end' => '83465043',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Psip1-005'
),
'ENSMUST00000152382' => array(
'start' => '83458075',
'end' => '83460292',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Psip1-008'
),
'ENSMUST00000053414' => array(
'start' => '83525545',
'end' => '83864670',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ccdc171-001'
),
'ENSMUST00000107202' => array(
'start' => '83549660',
'end' => '83558841',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ccdc171-003'
),
'ENSMUST00000125077' => array(
'start' => '83525639',
'end' => '83864585',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Ccdc171-006'
),
'ENSMUST00000126429' => array(
'start' => '83525614',
'end' => '83555378',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ccdc171-002'
),
'ENSMUST00000183729' => array(
'start' => '83695955',
'end' => '83798676',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ccdc171-005'
),
'ENSMUST00000082672' => array(
'start' => '83527628',
'end' => '83527768',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm25899-201'
),
'ENSMUST00000084445' => array(
'start' => '83505185',
'end' => '83505538',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm10154-001'
),
'ENSMUST00000118595' => array(
'start' => '83701084',
'end' => '83702036',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Cbx3-ps3-001'
),
'ENSMUST00000121795' => array(
'start' => '83500499',
'end' => '83500761',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm11414-001'
),
'ENSMUST00000182894' => array(
'start' => '83743677',
'end' => '83744157',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'Gm26968-001'
),
'ENSMUST00000182160' => array(
'start' => '83597303',
'end' => '83597765',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm27046-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_00051U_0002' => array(
'genes_in_region' => array(
'ENSG00000164985' => array(
[maximum depth reached]
),
'ENSG00000164989' => array(
[maximum depth reached]
),
'ENSG00000213362' => array(
[maximum depth reached]
),
'ENSG00000231376' => array(
[maximum depth reached]
),
'ENSG00000240613' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Heart',
(int) 4 => 'Liver',
(int) 5 => 'Lung',
(int) 6 => 'Muscle',
(int) 7 => 'Ovary',
(int) 8 => 'Placenta',
(int) 9 => 'Brain',
(int) 10 => 'Breast',
(int) 11 => 'Testis',
(int) 12 => 'Breast',
(int) 13 => 'Heart',
(int) 14 => 'Kidney',
(int) 15 => 'Liver',
(int) 16 => 'Lung',
(int) 17 => 'Ovary',
(int) 18 => 'Placenta',
(int) 19 => 'Muscle',
(int) 20 => 'Bladder',
(int) 21 => 'Brain',
(int) 22 => 'Lung',
(int) 23 => 'Adipose',
(int) 24 => 'Brain',
(int) 25 => 'Breast',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Adipose',
(int) 35 => 'Adrenal',
(int) 36 => 'Bladder',
(int) 37 => 'Brain',
(int) 38 => 'Colon',
(int) 39 => 'Liver',
(int) 40 => 'Lung',
(int) 41 => 'Muscle',
(int) 42 => 'Ovary',
(int) 43 => 'Placenta',
(int) 44 => 'Testis',
(int) 45 => 'Brain',
(int) 46 => 'Testis',
(int) 47 => 'Brain',
(int) 48 => 'Adipose',
(int) 49 => 'Adrenal',
(int) 50 => 'Brain',
(int) 51 => 'Breast',
(int) 52 => 'Colon',
(int) 53 => 'Heart',
(int) 54 => 'Kidney',
(int) 55 => 'Liver',
(int) 56 => 'Lung',
(int) 57 => 'Muscle',
(int) 58 => 'Ovary',
(int) 59 => 'Placenta',
(int) 60 => 'Testis',
(int) 61 => 'Adrenal',
(int) 62 => 'Adrenal',
(int) 63 => 'Brain',
(int) 64 => 'Liver',
(int) 65 => 'Placenta',
(int) 66 => 'Lung',
(int) 67 => 'Ovary',
(int) 68 => 'Placenta',
(int) 69 => 'Testis',
(int) 70 => 'Colon',
(int) 71 => 'Heart',
(int) 72 => 'Liver',
(int) 73 => 'Lung',
(int) 74 => 'Muscle',
(int) 75 => 'Ovary',
(int) 76 => 'Adipose',
(int) 77 => 'Adrenal',
(int) 78 => 'Brain',
(int) 79 => 'Breast',
(int) 80 => 'Colon',
(int) 81 => 'Heart',
(int) 82 => 'Kidney',
(int) 83 => 'Liver',
(int) 84 => 'Lung',
(int) 85 => 'Muscle',
(int) 86 => 'Ovary',
(int) 87 => 'Placenta',
(int) 88 => 'Testis',
(int) 89 => 'Ovary',
(int) 90 => 'Adrenal',
(int) 91 => 'Testis'
)
),
'CIL_00051U_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000028483' => array(
[maximum depth reached]
),
'ENSMUSG00000028484' => array(
[maximum depth reached]
),
'ENSMUSG00000052407' => array(
[maximum depth reached]
),
'ENSMUSG00000066116' => array(
[maximum depth reached]
),
'ENSMUSG00000080793' => array(
[maximum depth reached]
),
'ENSMUSG00000082416' => array(
[maximum depth reached]
),
'ENSMUSG00000097942' => array(
[maximum depth reached]
),
'ENSMUSG00000098217' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Breast',
(int) 2 => 'Heart',
(int) 3 => 'Kidney',
(int) 4 => 'Liver',
(int) 5 => 'Lung',
(int) 6 => 'Muscle',
(int) 7 => 'Adrenal',
(int) 8 => 'Breast',
(int) 9 => 'Colon',
(int) 10 => 'Breast',
(int) 11 => 'Kidney',
(int) 12 => 'Lung',
(int) 13 => 'Adipose',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Lung',
(int) 21 => 'Muscle',
(int) 22 => 'Ovary',
(int) 23 => 'Placenta',
(int) 24 => 'Testis',
(int) 25 => 'Adipose',
(int) 26 => 'Adrenal',
(int) 27 => 'Brain',
(int) 28 => 'Breast',
(int) 29 => 'Colon',
(int) 30 => 'Heart',
(int) 31 => 'Liver',
(int) 32 => 'Lung',
(int) 33 => 'Muscle',
(int) 34 => 'Ovary',
(int) 35 => 'Placenta',
(int) 36 => 'Adipose',
(int) 37 => 'Adrenal',
(int) 38 => 'Brain',
(int) 39 => 'Breast',
(int) 40 => 'Colon',
(int) 41 => 'Kidney',
(int) 42 => 'Liver',
(int) 43 => 'Lung',
(int) 44 => 'Ovary',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Adipose',
(int) 48 => 'Breast',
(int) 49 => 'Kidney',
(int) 50 => 'Lung',
(int) 51 => 'Ovary',
(int) 52 => 'Testis',
(int) 53 => 'Ovary',
(int) 54 => 'Placenta',
(int) 55 => 'Testis',
(int) 56 => 'Adrenal',
(int) 57 => 'Brain',
(int) 58 => 'Breast',
(int) 59 => 'Colon',
(int) 60 => 'Heart',
(int) 61 => 'Kidney',
(int) 62 => 'Liver',
(int) 63 => 'Lung',
(int) 64 => 'Muscle',
(int) 65 => 'Ovary',
(int) 66 => 'Placenta',
(int) 67 => 'Testis',
(int) 68 => 'Brain',
(int) 69 => 'Breast',
(int) 70 => 'Colon',
(int) 71 => 'Ovary',
(int) 72 => 'Adipose',
(int) 73 => 'Bladder',
(int) 74 => 'Brain',
(int) 75 => 'Breast',
(int) 76 => 'Heart',
(int) 77 => 'Kidney',
(int) 78 => 'Liver',
(int) 79 => 'Muscle',
(int) 80 => 'Ovary',
(int) 81 => 'Placenta',
(int) 82 => 'Testis',
(int) 83 => 'Adrenal',
(int) 84 => 'Colon',
(int) 85 => 'Muscle',
(int) 86 => 'Adrenal',
(int) 87 => 'Brain',
(int) 88 => 'Heart',
(int) 89 => 'Lung',
(int) 90 => 'Muscle',
(int) 91 => 'Ovary',
(int) 92 => 'Brain',
(int) 93 => 'Liver',
(int) 94 => 'Muscle',
(int) 95 => 'Ovary',
(int) 96 => 'Placenta',
(int) 97 => 'Bladder',
(int) 98 => 'Brain',
(int) 99 => 'Liver',
(int) 100 => 'Muscle',
(int) 101 => 'Ovary',
(int) 102 => 'Placenta',
(int) 103 => 'Testis',
(int) 104 => 'Brain',
(int) 105 => 'Placenta',
(int) 106 => 'Testis',
(int) 107 => 'Brain',
(int) 108 => 'Liver',
(int) 109 => 'Placenta',
(int) 110 => 'Colon',
(int) 111 => 'Liver',
(int) 112 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_00051U_0001',
'tax_id' => '7955',
'chromosome' => '23',
'seq_start' => '44907805',
'seq_end' => '44966494',
'region_length' => '58689',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000077405-ENSDARG00000027381'
)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(PSIP1)