C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane emp24 protein transport domain containing 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000457408 TMED4-001 ENSG00000158604 9606 - 7:44577894-44582259 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000457408
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000457408 16.507±0.00 17.637±0.00 9.046±0.00 14.872±5.10 12.621±4.07 10.025±2.46 7.579±2.88 18.167±10.20 5.557±3.35 16.700±7.70 14.774±8.19 21.727±9.35 37.047±5.05 14.257±0.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000J4 CIL_0000J4_0001 CGP 7:44565417-44582287
CIL_0000J7 CIL_0000J7_0001 CGP 7:44577894-44709066

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004871 IMP signal transducer activity
GO:0005783 IEA endoplasmic reticulum
GO:0006810 IEA transport
GO:0007165 IMP signal transduction
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane
GO:0043123 IMP positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000004508 Tmed4-001 protein_coding Mus_musculus 0 848
ENSMUST00000130621 Tmed4-003 retained_intron Mus_musculus 0 647
ENSMUST00000186398 Dars-002 retained_intron Mus_musculus 0.00000007 64

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