C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163104 SMARCAD1 9606 + 4:94207611-94291292 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000354268 SMARCAD1-002 94208047-94291292 protein_coding
  ENST00000359052 SMARCAD1-005 94207611-94291290 protein_coding
  ENST00000394961 SMARCAD1-007 94208084-94289899 nonsense_mediated_decay
  ENST00000457823 SMARCAD1-001 94207845-94290821 protein_coding
  ENST00000506089 SMARCAD1-009 94264528-94273700 retained_intron
  ENST00000509418 SMARCAD1-006 94253294-94289704 protein_coding
  ENST00000510105 SMARCAD1-004 94207866-94277159 nonsense_mediated_decay
  ENST00000514232 SMARCAD1-003 94270567-94274921 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000354268ENST00000359052ENST00000457823ENST00000509418
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000354268 1.046±0.00 0.617±0.00 N/A 1.407±0.51 N/A 0.264±0.00 0.810±0.00 2.087±0.00 0.817±0.00 0.858±0.00 N/A 2.029±0.67 2.154±1.59 3.063±1.92
ENST00000359052 N/A N/A N/A 1.279±0.00 2.590±0.00 N/A 0.596±0.38 N/A N/A 1.603±0.00 N/A 2.170±0.93 1.684±0.00 1.591±0.00
ENST00000457823 0.738±0.00 1.295±0.00 0.950±0.00 0.855±0.30 1.514±0.66 1.191±0.18 0.608±0.27 1.402±0.00 N/A 0.332±0.00 0.522±0.21 1.317±0.00 1.014±0.00 2.505±0.00
ENST00000509418 N/A N/A N/A 1.618±0.00 N/A 1.404±0.00 0.505±0.00 1.342±0.00 1.516±0.00 1.293±0.00 0.309±0.00 1.680±0.00 N/A 3.231±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005BX CIL_0005BX_0002 CGP 4:93828753-94291292
CIL_0000KQ CIL_0000KQ_0001 CGP 4:94207611-94342876

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000018 IEP regulation of DNA recombination
GO:0000729 IMP DNA double-strand break processing
GO:0000792 ISS heterochromatin
GO:0003676 NAS nucleic acid binding
GO:0003677 IDA:IEA DNA binding
GO:0004386 IEA helicase activity
GO:0005515 IPI:IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0006338 NAS chromatin remodeling
GO:0009117 NAS nucleotide metabolic process
GO:0016363 NAS nuclear matrix
GO:0016568 NAS chromatin modification
GO:0016787 IEA hydrolase activity
GO:0035861 IDA site of double-strand break
GO:0043044 IMP ATP-dependent chromatin remodeling
GO:0043596 IDA nuclear replication fork
GO:0045893 NAS positive regulation of transcription, DNA-templated
GO:0051260 NAS protein homooligomerization
GO:0051304 IMP chromosome separation
GO:0070932 IMP histone H3 deacetylation
GO:0070933 IMP histone H4 deacetylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014041 smarcad1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 protein_coding Danio_rerio
ENSDARG00000073721 SMARCAD1 (2 of 2) SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 protein_coding Danio_rerio
ENSMUSG00000029920 Smarcad1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 protein_coding Mus_musculus

Loading