C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000459631 CTD-3141N22.1-001 ENSG00000241069 9606 + 19:53386233-53386388 transcribed_processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004HA CIL_0004HA_0001 CGP 19:53330675-53392217
CIL_00055X CIL_00055X_0002 CGP 19:53333749-53430413

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121292 Rpl39l-002 protein_coding Mus_musculus 9.80909e-45 182
ENSMUST00000044103 Rpl39l-001 protein_coding Mus_musculus 9.80909e-45 182
ENSMUST00000117602 Gm15148-001 processed_pseudogene Mus_musculus 2e-37 158
ENSMUST00000115231 Rpl39-001 protein_coding Mus_musculus 6e-37 156
ENSMUST00000142604 Rpl39-ps-002 processed_transcript Mus_musculus 3e-35 150
ENSMUST00000146505 Rpl39-ps-001 transcribed_processed_pseudogene Mus_musculus 1e-33 145
ENSMUST00000121971 Gm12013-001 processed_pseudogene Mus_musculus 5e-33 143
ENSMUST00000191066 RP23-127L14.1-001 processed_pseudogene Mus_musculus 8e-31 135
ENSMUST00000118985 Gm14541-001 processed_pseudogene Mus_musculus 1e-28 128
ENSMUST00000118637 Gm11694-001 processed_pseudogene Mus_musculus 2e-27 124
ENSMUST00000119534 Gm15067-001 processed_pseudogene Mus_musculus 6e-27 122
ENSMUST00000138799 Rpl39-002 retained_intron Mus_musculus 1e-24 115

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